Variant report

Variant	rs5987093
Chromosome Location	chrX:154328863-154328864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:154297159..154298894-chrX:154328287..154329888,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1128863	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap]
rs12387365	1.00[CEU][hapmap]
rs1448032	1.00[GIH][hapmap]
rs17052027	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs3599	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs5940367	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs5940453	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs5945137	0.90[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.93[YRI][hapmap]
rs7881389	1.00[GIH][hapmap]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154300600-154329400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chrX:154300600-154331800	Weak transcription	Rectal Smooth Muscle	rectum
3	chrX:154300600-154350000	Weak transcription	Right Ventricle	heart
4	chrX:154300600-154351200	Weak transcription	Brain Cingulate Gyrus	brain
5	chrX:154300600-154355000	Weak transcription	Aorta	Aorta
6	chrX:154300800-154329800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chrX:154300800-154348000	Weak transcription	HSMM	muscle
8	chrX:154300800-154348200	Weak transcription	Osteobl	bone
9	chrX:154300800-154350800	Weak transcription	NHDF-Ad	bronchial
10	chrX:154300800-154351600	Weak transcription	Colonic Mucosa	Colon
11	chrX:154300800-154353400	Weak transcription	HSMMtube	muscle
12	chrX:154301200-154333600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chrX:154301200-154340800	Weak transcription	Brain Germinal Matrix	brain
14	chrX:154301200-154347800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chrX:154301200-154354200	Weak transcription	Esophagus	oesophagus
16	chrX:154302400-154338600	Weak transcription	HepG2	liver
17	chrX:154306000-154344800	Weak transcription	Primary T cells from cord blood	blood
18	chrX:154306200-154340600	Weak transcription	Psoas Muscle	Psoas
19	chrX:154306400-154346800	Weak transcription	Gastric	stomach
20	chrX:154306400-154349800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chrX:154306600-154329200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chrX:154306800-154350400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chrX:154307000-154332800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chrX:154307000-154349600	Weak transcription	Ovary	ovary
25	chrX:154307000-154349600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chrX:154307400-154351000	Weak transcription	Hela-S3	cervix
27	chrX:154307600-154350400	Weak transcription	Colon Smooth Muscle	Colon
28	chrX:154307800-154329600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chrX:154307800-154350000	Weak transcription	NH-A	brain
30	chrX:154307800-154350400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chrX:154307800-154352800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chrX:154307800-154357400	Weak transcription	Brain Hippocampus Middle	brain
33	chrX:154308000-154349000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chrX:154308000-154353600	Weak transcription	Fetal Intestine Large	intestine
35	chrX:154308200-154353800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chrX:154310200-154348600	Weak transcription	Lung	lung
37	chrX:154310800-154344400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chrX:154312400-154345000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chrX:154313800-154347800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chrX:154314200-154345200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chrX:154314400-154332600	Weak transcription	Primary hematopoietic stem cells	blood
42	chrX:154314600-154335600	Weak transcription	GM12878-XiMat	blood
43	chrX:154314600-154336000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chrX:154314600-154344600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chrX:154314600-154347800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chrX:154314600-154355800	Weak transcription	Brain Angular Gyrus	brain
47	chrX:154314800-154330800	Weak transcription	Fetal Muscle Trunk	muscle
48	chrX:154314800-154336400	Weak transcription	Fetal Muscle Leg	muscle
49	chrX:154314800-154346600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chrX:154314800-154346600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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