Variant report

Variant	rs5945137
Chromosome Location	chrX:154294900-154294901
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	X:154274113-154276803..X:154294484-154297970	H1-hESC	embryonic stem cell:	embryo
2	chrX:154292554..154294489-chrX:154294582..154296452,2	MCF-7	breast:
3	X:153190397-153198557..X:154294484-154297970	Hela-S3	cervix:
4	X:153537523-153552005..X:154294484-154297970	K562	blood:
5	chrX:154253966..154255593-chrX:154293661..154296202,2	K562	blood:
6	X:153574513-153584637..X:154294484-154297970	Hela-S3	cervix:
7	X:154015910-154019964..X:154294484-154297970	Hela-S3	cervix:
8	X:153625659-153635385..X:154294484-154297970	Hela-S3	cervix:
9	X:154293782-154294484..X:154294484-154297970	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
ENSG00000007350	Chromatin interaction
ENSG00000130830	Chromatin interaction
ENSG00000182712	Chromatin interaction
ENSG00000196924	Chromatin interaction
ENSG00000207165	Chromatin interaction
ENSG00000165775	Chromatin interaction
ENSG00000102030	Chromatin interaction
ENSG00000147403	Chromatin interaction
ENSG00000089820	Chromatin interaction
ENSG00000185010	Chromatin interaction
ENSG00000013563	Chromatin interaction
ENSG00000214827	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1128863	0.90[ASW][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap]
rs1448032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs28370235	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945128	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs5945269	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs5945286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5987093	0.90[ASW][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.93[YRI][hapmap]
rs7881389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154256400-154297800	Weak transcription	Ovary	ovary
2	chrX:154257200-154298200	Weak transcription	HSMMtube	muscle
3	chrX:154257600-154297800	Weak transcription	Right Ventricle	heart
4	chrX:154262800-154298400	Weak transcription	Brain Germinal Matrix	brain
5	chrX:154264200-154297800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chrX:154264600-154297800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chrX:154267200-154297800	Weak transcription	Primary B cells from cord blood	blood
8	chrX:154268000-154297800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chrX:154270200-154297800	Weak transcription	Fetal Lung	lung
10	chrX:154274000-154298400	Weak transcription	Esophagus	oesophagus
11	chrX:154276200-154298400	Weak transcription	Aorta	Aorta
12	chrX:154276200-154298400	Weak transcription	Psoas Muscle	Psoas
13	chrX:154276600-154298000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chrX:154277800-154298200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chrX:154280400-154298200	Weak transcription	Thymus	Thymus
16	chrX:154282400-154298000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chrX:154283200-154296600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chrX:154283200-154298000	Weak transcription	Spleen	Spleen
19	chrX:154285600-154298000	Weak transcription	Stomach Mucosa	stomach
20	chrX:154285600-154298200	Weak transcription	Fetal Intestine Large	intestine
21	chrX:154285600-154298400	Weak transcription	Gastric	stomach
22	chrX:154285800-154295600	Weak transcription	NHDF-Ad	bronchial
23	chrX:154285800-154296000	Weak transcription	HUVEC	blood vessel
24	chrX:154285800-154296400	Weak transcription	Fetal Heart	heart
25	chrX:154285800-154297400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chrX:154285800-154297600	Weak transcription	Rectal Smooth Muscle	rectum
27	chrX:154285800-154298000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chrX:154285800-154298000	Weak transcription	Fetal Intestine Small	intestine
29	chrX:154286000-154296600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chrX:154286000-154297400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chrX:154286000-154297600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chrX:154286000-154297600	Weak transcription	Stomach Smooth Muscle	stomach
33	chrX:154286000-154297800	Weak transcription	Primary T cells from cord blood	blood
34	chrX:154286000-154298000	Weak transcription	Primary hematopoietic stem cells	blood
35	chrX:154286000-154298000	Weak transcription	Brain Angular Gyrus	brain
36	chrX:154286000-154298200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chrX:154286000-154298200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chrX:154286000-154298200	Weak transcription	Brain Cingulate Gyrus	brain
39	chrX:154286000-154298200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chrX:154286000-154298200	Weak transcription	Fetal Muscle Leg	muscle
41	chrX:154286000-154298400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chrX:154286200-154295600	Weak transcription	GM12878-XiMat	blood
43	chrX:154286200-154296400	Weak transcription	K562	blood
44	chrX:154286200-154296600	Weak transcription	HepG2	liver
45	chrX:154286200-154297200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chrX:154286200-154297600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chrX:154286200-154297600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chrX:154286200-154297600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chrX:154286200-154297800	Weak transcription	Brain Anterior Caudate	brain
50	chrX:154286200-154297800	Weak transcription	Rectal Mucosa Donor 29	rectum

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