Variant report

Variant	rs5945269
Chromosome Location	chrX:154219318-154219319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1448032	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap]
rs2084409	0.84[YRI][hapmap]
rs2096362	0.84[LWK][hapmap]
rs2313058	0.83[LWK][hapmap]
rs28370235	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945128	0.90[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs5945137	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs5945286	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5986908	0.80[YRI][hapmap]
rs6649617	0.83[LWK][hapmap];0.80[YRI][hapmap]
rs7881389	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154209600-154235600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chrX:154213000-154233000	Weak transcription	Left Ventricle	heart
3	chrX:154216600-154232800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chrX:154218400-154235400	Weak transcription	Liver	Liver
5	chrX:154218600-154219800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chrX:154219000-154219400	Enhancers	HMEC	breast
7	chrX:154219000-154219600	Enhancers	Pancreas	Pancrea
8	chrX:154219200-154219600	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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