Variant report

Variant	rs2313058
Chromosome Location	chrX:154264226-154264227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:154257531..154259772-chrX:154264088..154265671,2	K562	blood:
2	chrX:154253862..154259561-chrX:154263056..154266180,4	MCF-7	breast:
3	chrX:154253515..154257172-chrX:154263132..154265873,5	K562	blood:
4	chrX:154253515..154259549-chrX:154260392..154267500,12	K562	blood:
5	chrX:154253201..154258357-chrX:154258603..154265677,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165775	Chromatin interaction
ENSG00000185010	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1075950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1470586	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs17051889	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs1936645	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2084409	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs2096362	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs4074307	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs4898352	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs4898358	0.94[GIH][hapmap]
rs4898406	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs4898407	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4898408	0.81[CHB][hapmap]
rs5945133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs5945134	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945269	0.83[LWK][hapmap]
rs5945279	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs5945281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945287	0.81[CEU][hapmap];0.88[GIH][hapmap]
rs5945289	0.81[GIH][hapmap]
rs5945296	0.88[MEX][hapmap]
rs5945300	0.94[GIH][hapmap]
rs5945301	0.91[GIH][hapmap]
rs5986908	0.94[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap]
rs5987077	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs5987079	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap]
rs5987092	0.94[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap]
rs5987094	0.94[CEU][hapmap]
rs6643622	0.89[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs6649617	0.94[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap]
rs7472099	0.88[MEX][hapmap]
rs965691	0.88[MEX][hapmap]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154255800-154268400	Weak transcription	Spleen	Spleen
2	chrX:154256400-154275400	Weak transcription	Thymus	Thymus
3	chrX:154256400-154293800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chrX:154256400-154297800	Weak transcription	Ovary	ovary
5	chrX:154256600-154282200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chrX:154256600-154284800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chrX:154256800-154274600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chrX:154256800-154285400	Weak transcription	Rectal Smooth Muscle	rectum
9	chrX:154257200-154285200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chrX:154257200-154298200	Weak transcription	HSMMtube	muscle
11	chrX:154257400-154265600	Weak transcription	Osteobl	bone
12	chrX:154257400-154271800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chrX:154257400-154285000	Weak transcription	HepG2	liver
14	chrX:154257400-154285200	Weak transcription	Stomach Smooth Muscle	stomach
15	chrX:154257600-154264400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chrX:154257600-154273800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chrX:154257600-154275000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chrX:154257600-154275400	Weak transcription	Psoas Muscle	Psoas
19	chrX:154257600-154275600	Weak transcription	Left Ventricle	heart
20	chrX:154257600-154277000	Weak transcription	Brain Cingulate Gyrus	brain
21	chrX:154257600-154277600	Weak transcription	NHDF-Ad	bronchial
22	chrX:154257600-154284800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chrX:154257600-154285000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chrX:154257600-154285000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chrX:154257600-154285200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chrX:154257600-154297800	Weak transcription	Right Ventricle	heart
27	chrX:154257800-154274800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chrX:154261800-154264400	Strong transcription	Primary T cells fromperipheralblood	blood
29	chrX:154261800-154264600	Strong transcription	Dnd41	blood
30	chrX:154261800-154265400	Strong transcription	Primary B cells from peripheral blood	blood
31	chrX:154261800-154265600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chrX:154262000-154264600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chrX:154262000-154264800	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chrX:154262000-154264800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chrX:154262400-154264600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chrX:154262400-154265000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chrX:154262600-154264600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chrX:154262600-154264800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chrX:154262800-154264600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
40	chrX:154262800-154264600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
41	chrX:154262800-154298400	Weak transcription	Brain Germinal Matrix	brain
42	chrX:154263000-154264600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
43	chrX:154263000-154280600	Weak transcription	Hela-S3	cervix
44	chrX:154263200-154276200	Weak transcription	Liver	Liver
45	chrX:154263400-154264400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chrX:154263400-154264400	ZNF genes & repeats	Brain Anterior Caudate	brain
47	chrX:154263400-154264600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
48	chrX:154263400-154264600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
49	chrX:154263400-154264600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chrX:154263400-154264800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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