Variant report

Variant	rs4898358
Chromosome Location	chrX:154343911-154343912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:154343749..154345554-chrX:154364489..154366679,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235991	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1470586	0.93[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs17051889	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs2084408	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs2084409	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs2096362	0.91[GIH][hapmap]
rs2313058	0.94[GIH][hapmap]
rs4898406	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs4898407	0.81[CHB][hapmap]
rs4898408	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4898413	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945134	0.93[CEU][hapmap]
rs5945279	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs5945287	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs5945289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5945300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5945301	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.82[MKK][hapmap]
rs5986902	0.93[CEU][hapmap]
rs5986908	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs5987077	0.91[GIH][hapmap]
rs5987079	0.91[GIH][hapmap]
rs5987087	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs5987090	0.82[CHB][hapmap]
rs5987092	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs5987094	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6642218	0.81[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs6643622	0.82[GIH][hapmap]
rs6649617	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs7051718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7472099	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs7879736	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs895744	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs895745	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs965691	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154300600-154350000	Weak transcription	Right Ventricle	heart
2	chrX:154300600-154351200	Weak transcription	Brain Cingulate Gyrus	brain
3	chrX:154300600-154355000	Weak transcription	Aorta	Aorta
4	chrX:154300800-154348000	Weak transcription	HSMM	muscle
5	chrX:154300800-154348200	Weak transcription	Osteobl	bone
6	chrX:154300800-154350800	Weak transcription	NHDF-Ad	bronchial
7	chrX:154300800-154351600	Weak transcription	Colonic Mucosa	Colon
8	chrX:154300800-154353400	Weak transcription	HSMMtube	muscle
9	chrX:154301200-154347800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chrX:154301200-154354200	Weak transcription	Esophagus	oesophagus
11	chrX:154306000-154344800	Weak transcription	Primary T cells from cord blood	blood
12	chrX:154306400-154346800	Weak transcription	Gastric	stomach
13	chrX:154306400-154349800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chrX:154306800-154350400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chrX:154307000-154349600	Weak transcription	Ovary	ovary
16	chrX:154307000-154349600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chrX:154307400-154351000	Weak transcription	Hela-S3	cervix
18	chrX:154307600-154350400	Weak transcription	Colon Smooth Muscle	Colon
19	chrX:154307800-154350000	Weak transcription	NH-A	brain
20	chrX:154307800-154350400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chrX:154307800-154352800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chrX:154307800-154357400	Weak transcription	Brain Hippocampus Middle	brain
23	chrX:154308000-154349000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chrX:154308000-154353600	Weak transcription	Fetal Intestine Large	intestine
25	chrX:154308200-154353800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chrX:154310200-154348600	Weak transcription	Lung	lung
27	chrX:154310800-154344400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chrX:154312400-154345000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chrX:154313800-154347800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chrX:154314200-154345200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chrX:154314600-154344600	Weak transcription	Primary T cells fromperipheralblood	blood
32	chrX:154314600-154347800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chrX:154314600-154355800	Weak transcription	Brain Angular Gyrus	brain
34	chrX:154314800-154346600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chrX:154314800-154346600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chrX:154314800-154350000	Weak transcription	Spleen	Spleen
37	chrX:154314800-154353400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chrX:154314800-154353600	Weak transcription	Thymus	Thymus
39	chrX:154315200-154346600	Weak transcription	Fetal Intestine Small	intestine
40	chrX:154315400-154349800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chrX:154318200-154349400	Weak transcription	Left Ventricle	heart
42	chrX:154318400-154344800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chrX:154318600-154348200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chrX:154319400-154355400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chrX:154319600-154355200	Weak transcription	Primary B cells from cord blood	blood
46	chrX:154320000-154354400	Weak transcription	Placenta	Placenta
47	chrX:154320200-154344800	Weak transcription	Liver	Liver
48	chrX:154320200-154346400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chrX:154321200-154349600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chrX:154322600-154344600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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