Variant report

Variant	rs6643622
Chromosome Location	chrX:154173530-154173531
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	X:154015910-154019964..X:154171083-154173860	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000130830	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1050705	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[YRI][hapmap]
rs1075950	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1126762	0.89[CHD][hapmap]
rs1470586	0.89[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs1472977	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17051889	0.89[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs1848762	0.89[CHD][hapmap]
rs1936645	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2084409	0.88[GIH][hapmap];0.89[MEX][hapmap]
rs2096362	0.89[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs2221730	0.89[CHD][hapmap]
rs2313058	0.89[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs2664161	1.00[CHD][hapmap]
rs2728538	0.94[CHD][hapmap]
rs4074307	0.87[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap]
rs4898352	0.88[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap]
rs4898358	0.82[GIH][hapmap]
rs4898396	0.89[CHD][hapmap]
rs4898397	1.00[JPT][hapmap]
rs4898406	0.89[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs4898407	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs5945133	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs5945134	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs5945250	0.88[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs5945279	0.89[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs5945281	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs5945296	0.88[MEX][hapmap]
rs5945300	0.82[GIH][hapmap]
rs5986908	0.85[GIH][hapmap];0.83[MEX][hapmap]
rs5987077	0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs5987079	0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs5987092	0.85[GIH][hapmap];0.82[MEX][hapmap]
rs6649617	0.85[GIH][hapmap];0.89[MEX][hapmap]
rs7472099	0.88[MEX][hapmap]
rs965691	0.88[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6643622	PLXNA3	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154153200-154209000	Weak transcription	Left Ventricle	heart

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