Variant report

Variant	rs1126762
Chromosome Location	chrX:154020114-154020115
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrX:154019214-154020646	K562	blood:	n/a	n/a
2	POLR2A	chrX:154018930-154024370	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	X:154015910-154019964..X:154019964-154020149	H1-hESC	embryonic stem cell:	embryo
2	X:154019964-154020149..X:154020149-154020714	H1-hESC	embryonic stem cell:	embryo
3	chrX:153990321..153992649-chrX:154019523..154021141,3	MCF-7	breast:
4	X:154013320-154015910..X:154019964-154020149	H1-hESC	embryonic stem cell:	embryo
5	chrX:154019167..154022429-chrX:154030729..154034585,3	MCF-7	breast:
6	chrX:153990595..153992573-chrX:154019539..154022418,3	MCF-7	breast:

No data

Variant related genes	Relation type
MPP1	TF binding region
ENSG00000130830	Chromatin interaction
ENSG00000130826	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1050705	0.89[CHD][hapmap]
rs1472977	0.81[MEX][hapmap]
rs1848762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.87[YRI][hapmap]
rs2048294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2221730	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2664161	0.81[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs2664167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2728538	0.87[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs4074307	0.89[CHD][hapmap]
rs4898352	0.89[CHD][hapmap]
rs4898396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5945250	0.81[CEU][hapmap];0.89[CHD][hapmap];0.88[MEX][hapmap]
rs5986902	0.81[CEU][hapmap]
rs6643622	0.89[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1126762	PLXNA3	cis	multi-tissue	Pritchard

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153995800-154023000	Weak transcription	Psoas Muscle	Psoas
2	chrX:154004600-154032400	Weak transcription	Small Intestine	intestine
3	chrX:154005400-154027800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chrX:154005600-154028800	Weak transcription	Brain Anterior Caudate	brain
5	chrX:154005800-154027800	Weak transcription	Brain Cingulate Gyrus	brain
6	chrX:154006000-154027400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chrX:154006200-154028000	Weak transcription	Left Ventricle	heart
8	chrX:154006200-154033200	Weak transcription	Aorta	Aorta
9	chrX:154006400-154027200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chrX:154006400-154027800	Weak transcription	Esophagus	oesophagus
11	chrX:154008000-154027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chrX:154008400-154025400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chrX:154008800-154027600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chrX:154009400-154020600	Weak transcription	A549	lung
15	chrX:154009600-154027800	Weak transcription	Brain Hippocampus Middle	brain
16	chrX:154009800-154031800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chrX:154010000-154027800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chrX:154010000-154027800	Weak transcription	Stomach Smooth Muscle	stomach
19	chrX:154010000-154028000	Weak transcription	Fetal Intestine Large	intestine
20	chrX:154010000-154030200	Weak transcription	Lung	lung
21	chrX:154010400-154021800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chrX:154010400-154027400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chrX:154010800-154027400	Weak transcription	Brain Angular Gyrus	brain
24	chrX:154010800-154032800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chrX:154011000-154027200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chrX:154012400-154025200	Weak transcription	Primary B cells from cord blood	blood
27	chrX:154012800-154022200	Weak transcription	HepG2	liver
28	chrX:154012800-154027400	Weak transcription	Primary T cells from cord blood	blood
29	chrX:154013200-154027200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chrX:154014400-154020400	Weak transcription	Fetal Stomach	stomach
31	chrX:154014600-154020400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chrX:154014600-154022600	Weak transcription	Pancreas	Pancrea
33	chrX:154014600-154024600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chrX:154014600-154026000	Weak transcription	Thymus	Thymus
35	chrX:154014600-154026200	Weak transcription	Dnd41	blood
36	chrX:154014600-154027400	Weak transcription	Fetal Intestine Small	intestine
37	chrX:154014800-154020400	Weak transcription	Duodenum Mucosa	Duodenum
38	chrX:154014800-154027800	Weak transcription	Placenta	Placenta
39	chrX:154015000-154024600	Weak transcription	Primary hematopoietic stem cells	blood
40	chrX:154015600-154020600	Strong transcription	Fetal Thymus	thymus
41	chrX:154015800-154020800	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chrX:154016000-154021000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chrX:154017400-154021200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chrX:154018400-154024800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chrX:154019200-154024800	Genic enhancers	K562	blood
46	chrX:154019400-154023200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chrX:154019600-154020400	Weak transcription	Liver	Liver
48	chrX:154019600-154020800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chrX:154019600-154027800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chrX:154020000-154022600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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