Variant report

Variant	rs4898396
Chromosome Location	chrX:154022818-154022819
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrX:154022669-154022972	K562	blood:	n/a	n/a
2	POLR2A	chrX:154022532-154023089	K562	blood:	n/a	n/a
3	POLR2A	chrX:154018930-154024370	K562	blood:	n/a	n/a
4	POLR2A	chrX:154022625-154023011	K562	blood:	n/a	n/a
5	POLR2A	chrX:154021992-154023089	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:154021028..154023325-chrX:154025075..154028441,3	MCF-7	breast:

Variant related genes	Relation type
MPP1	TF binding region
ENSG00000130830	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1050705	0.89[CHD][hapmap]
rs1126762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1472977	0.81[MEX][hapmap]
rs1848762	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.96[TSI][hapmap]
rs2048294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2221730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2664161	0.81[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs2664167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2728538	0.87[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs4074307	0.89[CHD][hapmap]
rs4898352	0.89[CHD][hapmap]
rs5945250	0.81[CEU][hapmap];0.89[CHD][hapmap];0.88[MEX][hapmap]
rs5986902	0.81[CEU][hapmap]
rs6643620	0.81[TSI][hapmap]
rs6643622	0.89[CHD][hapmap]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153995800-154023000	Weak transcription	Psoas Muscle	Psoas
2	chrX:154004600-154032400	Weak transcription	Small Intestine	intestine
3	chrX:154005400-154027800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chrX:154005600-154028800	Weak transcription	Brain Anterior Caudate	brain
5	chrX:154005800-154027800	Weak transcription	Brain Cingulate Gyrus	brain
6	chrX:154006000-154027400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chrX:154006200-154028000	Weak transcription	Left Ventricle	heart
8	chrX:154006200-154033200	Weak transcription	Aorta	Aorta
9	chrX:154006400-154027200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chrX:154006400-154027800	Weak transcription	Esophagus	oesophagus
11	chrX:154008000-154027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chrX:154008400-154025400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chrX:154008800-154027600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chrX:154009600-154027800	Weak transcription	Brain Hippocampus Middle	brain
15	chrX:154009800-154031800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chrX:154010000-154027800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chrX:154010000-154027800	Weak transcription	Stomach Smooth Muscle	stomach
18	chrX:154010000-154028000	Weak transcription	Fetal Intestine Large	intestine
19	chrX:154010000-154030200	Weak transcription	Lung	lung
20	chrX:154010400-154027400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chrX:154010800-154027400	Weak transcription	Brain Angular Gyrus	brain
22	chrX:154010800-154032800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chrX:154011000-154027200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chrX:154012400-154025200	Weak transcription	Primary B cells from cord blood	blood
25	chrX:154012800-154027400	Weak transcription	Primary T cells from cord blood	blood
26	chrX:154013200-154027200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chrX:154014600-154024600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chrX:154014600-154026000	Weak transcription	Thymus	Thymus
29	chrX:154014600-154026200	Weak transcription	Dnd41	blood
30	chrX:154014600-154027400	Weak transcription	Fetal Intestine Small	intestine
31	chrX:154014800-154027800	Weak transcription	Placenta	Placenta
32	chrX:154015000-154024600	Weak transcription	Primary hematopoietic stem cells	blood
33	chrX:154018400-154024800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chrX:154019200-154024800	Genic enhancers	K562	blood
35	chrX:154019400-154023200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chrX:154019600-154027800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chrX:154020800-154023600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chrX:154020800-154027600	Weak transcription	Duodenum Mucosa	Duodenum
39	chrX:154021400-154024800	Weak transcription	A549	lung
40	chrX:154021800-154027400	Weak transcription	Liver	Liver
41	chrX:154022400-154026000	Enhancers	Fetal Thymus	thymus
42	chrX:154022400-154026200	Enhancers	Primary monocytes fromperipheralblood	blood
43	chrX:154022600-154023400	Enhancers	Pancreas	Pancrea
44	chrX:154022600-154024400	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chrX:154022600-154025000	Weak transcription	HepG2	liver
46	chrX:154022600-154025600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chrX:154022800-154027600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chrX:154022800-154027800	Enhancers	Monocytes-CD14+_RO01746	blood

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