Variant report

Variant	rs4898352
Chromosome Location	chrX:154132090-154132091
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	X:154130142-154132988..X:154298909-154305587	Hela-S3	cervix:
2	chrX:154124544..154126255-chrX:154131768..154133658,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214827	Chromatin interaction
ENSG00000185515	Chromatin interaction
ENSG00000182712	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1050705	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs1075950	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1126762	0.89[CHD][hapmap]
rs1470586	0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs1472977	1.00[ASW][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs17051889	0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs1848762	0.89[CHD][hapmap]
rs1936645	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2084409	0.94[CEU][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap]
rs2096362	1.00[CEU][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap]
rs2221730	0.89[CHD][hapmap]
rs2313058	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs2664161	1.00[ASW][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap]
rs2728538	0.88[CHB][hapmap];0.94[CHD][hapmap]
rs4074307	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs4898396	0.89[CHD][hapmap]
rs4898397	1.00[JPT][hapmap]
rs4898398	0.82[GIH][hapmap]
rs4898406	0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs4898407	1.00[JPT][hapmap]
rs5945133	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs5945134	1.00[JPT][hapmap]
rs5945250	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs5945279	0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs5945281	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs5945287	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs5945300	0.81[GIH][hapmap]
rs5945301	0.84[GIH][hapmap]
rs5987077	1.00[CEU][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs5987079	1.00[CEU][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs5987092	0.94[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap]
rs5987094	0.94[CEU][hapmap]
rs6643622	0.88[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap]
rs965691	0.89[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4898352	PLXNA3	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154120800-154134800	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links