Variant report
| Variant | rs1936645 |
|---|---|
| Chromosome Location | chrX:154198170-154198171 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chrX:154198080-154198230 | MCF-7 | breast: | n/a | n/a |
| 2 | CTCF | chrX:154198120-154198270 | A549 | lung: | n/a | n/a |
| 3 | CTCF | chrX:154198040-154198190 | GM12873 | blood: | n/a | n/a |
| 4 | CTCF | chrX:154198020-154198170 | GM12864 | blood: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| F8 | TF binding region |
| ENSG00000214827 | Chromatin interaction |
| ENSG00000185515 | Chromatin interaction |
| ENSG00000182712 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1050705 | 1.00[CEU][hapmap];0.88[CHB][hapmap] |
| rs1075950 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs1470586 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs1472977 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs17051889 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs17328181 | 1.00[JPT][hapmap] |
| rs2084409 | 0.94[CEU][hapmap] |
| rs2096362 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs2313058 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs4074307 | 1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap] |
| rs4898352 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs4898406 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs4898407 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs5945133 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs5945134 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs5945250 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs5945279 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs5945281 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs5945287 | 0.81[CEU][hapmap] |
| rs5986908 | 0.94[CEU][hapmap] |
| rs5987077 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs5987079 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs5987092 | 0.94[CEU][hapmap] |
| rs5987094 | 0.94[CEU][hapmap] |
| rs6643622 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6649617 | 0.94[CEU][hapmap] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:154153200-154209000 | Weak transcription | Left Ventricle | heart |
