Variant report

Variant	rs5987077
Chromosome Location	chrX:154224425-154224426
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:154223090..154225991-chrX:154253081..154255141,2	K562	blood:
2	chrX:154223105..154224707-chrX:154230284..154233432,3	K562	blood:
3	chrX:154218699..154221499-chrX:154224275..154226672,3	K562	blood:
4	X:154222333-154225256..X:154298909-154305587	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000214827	Chromatin interaction
ENSG00000165775	Chromatin interaction
ENSG00000185515	Chromatin interaction
ENSG00000182712	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1050705	1.00[CEU][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.94[MEX][hapmap]
rs1075950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1470586	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs1472977	1.00[JPT][hapmap]
rs17051889	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs1936645	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2084409	0.94[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];0.80[TSI][hapmap]
rs2096362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap]
rs2313058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs2664161	0.89[CHD][hapmap];0.82[GIH][hapmap]
rs2728538	0.83[CHD][hapmap]
rs4074307	1.00[CEU][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs4898352	1.00[CEU][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs4898358	0.91[GIH][hapmap]
rs4898397	1.00[JPT][hapmap]
rs4898406	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs4898407	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4898408	0.81[CHB][hapmap]
rs5945133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945134	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945250	0.89[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs5945279	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs5945281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945287	0.81[CEU][hapmap];0.91[GIH][hapmap]
rs5945296	0.94[MEX][hapmap]
rs5945300	0.91[GIH][hapmap]
rs5945301	0.94[GIH][hapmap]
rs5986908	0.94[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap]
rs5987079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap]
rs5987092	0.94[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap]
rs5987094	0.94[CEU][hapmap]
rs6643622	0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs6649617	0.94[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap]
rs7472099	0.94[MEX][hapmap]
rs965691	0.94[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5987077	PLXNA3	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154209600-154235600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chrX:154213000-154233000	Weak transcription	Left Ventricle	heart
3	chrX:154216600-154232800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chrX:154218400-154235400	Weak transcription	Liver	Liver

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