Variant report
| Variant | rs5945296 |
|---|---|
| Chromosome Location | chrX:154371927-154371928 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chrX:154369254..154370862-chrX:154371091..154373222,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11887 | 0.87[ASW][hapmap] |
| rs2051161 | 0.97[GIH][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap] |
| rs2084408 | 0.88[GIH][hapmap] |
| rs2084409 | 0.82[CEU][hapmap];0.89[MEX][hapmap] |
| rs2096362 | 0.89[MEX][hapmap] |
| rs2313058 | 0.88[MEX][hapmap] |
| rs4898413 | 1.00[CEU][hapmap] |
| rs499669 | 0.87[ASW][hapmap] |
| rs547724 | 0.87[ASW][hapmap] |
| rs5945140 | 0.80[CEU][hapmap] |
| rs5945282 | 0.91[GIH][hapmap];0.92[MKK][hapmap] |
| rs5986908 | 0.82[CEU][hapmap];0.83[MEX][hapmap] |
| rs5987077 | 0.94[MEX][hapmap] |
| rs5987079 | 0.89[MEX][hapmap] |
| rs5987087 | 0.85[GIH][hapmap] |
| rs5987092 | 0.82[CEU][hapmap];0.82[MEX][hapmap] |
| rs6642218 | 0.91[GIH][hapmap] |
| rs6643622 | 0.88[MEX][hapmap] |
| rs6649617 | 0.82[CEU][hapmap];0.89[MEX][hapmap] |
| rs7472099 | 1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap] |
| rs895744 | 0.88[GIH][hapmap] |
| rs895745 | 0.88[GIH][hapmap] |
| rs965691 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
