Variant report

Variant	rs6642218
Chromosome Location	chrX:154366301-154366302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:154365549..154366431-chrX:154377119..154377720,2	MCF-7	breast:
2	X:153198557-153214268..X:154364864-154366380	K562	blood:

Variant related genes	Relation type
ENSG00000102032	Chromatin interaction
ENSG00000089820	Chromatin interaction
ENSG00000102030	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1470586	0.88[MEX][hapmap]
rs17051889	0.88[MEX][hapmap]
rs2051161	0.81[CHD][hapmap];0.94[GIH][hapmap]
rs2084408	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs2084409	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs4898358	0.81[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs4898406	0.88[MEX][hapmap]
rs4898408	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4898413	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs5945279	0.88[MEX][hapmap]
rs5945282	0.88[GIH][hapmap]
rs5945287	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs5945289	0.81[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs5945296	0.91[GIH][hapmap]
rs5945300	0.81[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs5945301	0.81[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs5986908	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs5987087	0.85[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs5987092	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs5987094	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6649617	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs7051718	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7472099	0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs7879736	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs895744	0.85[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs895745	0.85[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs965691	0.92[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154366000-154366400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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