Variant report

Variant	rs17051889
Chromosome Location	chrX:154229403-154229404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:154219125..154221880-chrX:154226951..154230400,3	K562	blood:
2	chrX:154219125..154223011-chrX:154226951..154229988,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1050705	0.88[CHD][hapmap]
rs1075950	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1470586	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1472977	1.00[JPT][hapmap];0.80[MEX][hapmap]
rs1936645	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2084408	0.88[MEX][hapmap]
rs2084409	0.94[GIH][hapmap]
rs2096362	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs2313058	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs2664161	1.00[CEU][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.87[MEX][hapmap]
rs4074307	0.81[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs4898352	0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs4898358	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs4898397	1.00[JPT][hapmap]
rs4898406	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap]
rs4898407	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap]
rs4898408	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs5945133	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs5945250	1.00[CEU][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs5945279	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs5945281	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945287	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs5945289	0.93[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs5945300	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs5945301	0.93[CEU][hapmap];0.97[GIH][hapmap];0.93[MEX][hapmap]
rs5986902	1.00[CEU][hapmap]
rs5986908	0.91[GIH][hapmap]
rs5987077	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs5987079	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs5987087	0.88[MEX][hapmap]
rs5987092	0.91[GIH][hapmap]
rs6642218	0.88[MEX][hapmap]
rs6643622	0.89[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs6649617	0.91[GIH][hapmap]
rs7051718	0.93[CEU][hapmap]
rs895744	0.82[MEX][hapmap]
rs895745	0.88[MEX][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154209600-154235600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chrX:154213000-154233000	Weak transcription	Left Ventricle	heart
3	chrX:154216600-154232800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chrX:154218400-154235400	Weak transcription	Liver	Liver
5	chrX:154227200-154229600	Weak transcription	Pancreas	Pancrea
6	chrX:154227400-154232600	Weak transcription	K562	blood
7	chrX:154229000-154229600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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