Variant report

Variant	rs5945134
Chromosome Location	chrX:154274208-154274209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:154254431..154256383-chrX:154273470..154275766,2	MCF-7	breast:
2	X:153614328-153625659..X:154274113-154276803	K562	blood:
3	X:154140465-154148278..X:154274113-154276803	H1-hESC	embryonic stem cell:	embryo
4	chrX:154254046..154257444-chrX:154268316..154274763,8	K562	blood:

Variant related genes	Relation type
ENSG00000185010	Chromatin interaction
ENSG00000165775	Chromatin interaction
ENSG00000147403	Chromatin interaction
ENSG00000237859	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1075950	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1470586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs17051889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs17328181	1.00[JPT][hapmap]
rs1936645	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2096362	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2313058	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4074307	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4898352	1.00[JPT][hapmap]
rs4898358	0.93[CEU][hapmap]
rs4898406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4898407	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4898408	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs5945133	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945281	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945287	0.81[CEU][hapmap]
rs5945289	0.93[CEU][hapmap]
rs5945300	0.93[CEU][hapmap]
rs5945301	0.93[CEU][hapmap]
rs5986902	1.00[CEU][hapmap]
rs5987077	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5987079	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6643622	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7051718	0.93[CEU][hapmap]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154256400-154275400	Weak transcription	Thymus	Thymus
2	chrX:154256400-154293800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chrX:154256400-154297800	Weak transcription	Ovary	ovary
4	chrX:154256600-154282200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chrX:154256600-154284800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chrX:154256800-154274600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chrX:154256800-154285400	Weak transcription	Rectal Smooth Muscle	rectum
8	chrX:154257200-154285200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chrX:154257200-154298200	Weak transcription	HSMMtube	muscle
10	chrX:154257400-154285000	Weak transcription	HepG2	liver
11	chrX:154257400-154285200	Weak transcription	Stomach Smooth Muscle	stomach
12	chrX:154257600-154275000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chrX:154257600-154275400	Weak transcription	Psoas Muscle	Psoas
14	chrX:154257600-154275600	Weak transcription	Left Ventricle	heart
15	chrX:154257600-154277000	Weak transcription	Brain Cingulate Gyrus	brain
16	chrX:154257600-154277600	Weak transcription	NHDF-Ad	bronchial
17	chrX:154257600-154284800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chrX:154257600-154285000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chrX:154257600-154285000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chrX:154257600-154285200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chrX:154257600-154297800	Weak transcription	Right Ventricle	heart
22	chrX:154257800-154274800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chrX:154262800-154298400	Weak transcription	Brain Germinal Matrix	brain
24	chrX:154263000-154280600	Weak transcription	Hela-S3	cervix
25	chrX:154263200-154276200	Weak transcription	Liver	Liver
26	chrX:154263800-154284800	Weak transcription	Placenta	Placenta
27	chrX:154263800-154289800	Weak transcription	HSMM	muscle
28	chrX:154264000-154285400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chrX:154264200-154274600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chrX:154264200-154275600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chrX:154264200-154285000	Weak transcription	Fetal Intestine Small	intestine
32	chrX:154264200-154297800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chrX:154264400-154274800	Weak transcription	Duodenum Mucosa	Duodenum
34	chrX:154264400-154275000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chrX:154264400-154277800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chrX:154264400-154280000	Weak transcription	Brain Anterior Caudate	brain
37	chrX:154264400-154285000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chrX:154264600-154274800	Weak transcription	Fetal Muscle Leg	muscle
39	chrX:154264600-154275200	Weak transcription	Brain Hippocampus Middle	brain
40	chrX:154264600-154275600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chrX:154264600-154275600	Weak transcription	Adipose Nuclei	Adipose
42	chrX:154264600-154280200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chrX:154264600-154280600	Weak transcription	Primary T cells from cord blood	blood
44	chrX:154264600-154284800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chrX:154264600-154285200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chrX:154264600-154285600	Weak transcription	Brain Substantia Nigra	brain
47	chrX:154264600-154297800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chrX:154264800-154274600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chrX:154264800-154274600	Weak transcription	Fetal Thymus	thymus
50	chrX:154264800-154275600	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links