Variant report

Variant	rs5945287
Chromosome Location	chrX:154314030-154314031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:154296796..154302221-chrX:154311592..154316573,8	K562	blood:
2	chrX:154313678..154316046-chrX:154318744..154320499,2	MCF-7	breast:
3	chrX:154306179..154308109-chrX:154313069..154315543,3	MCF-7	breast:
4	chrX:154313372..154315562-chrX:154320185..154322218,2	K562	blood:
5	chrX:154254129..154255822-chrX:154313410..154315167,2	K562	blood:
6	chrX:154308317..154310819-chrX:154313711..154316006,2	K562	blood:
7	chrX:154254985..154257018-chrX:154312874..154315354,2	MCF-7	breast:
8	chrX:154298513..154302232-chrX:154311338..154315160,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165775	Chromatin interaction
ENSG00000185515	Chromatin interaction
ENSG00000214827	Chromatin interaction
ENSG00000182712	Chromatin interaction
ENSG00000185010	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1075950	0.81[CEU][hapmap]
rs1470586	0.81[CEU][hapmap];0.84[GIH][hapmap]
rs17051889	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs1936645	0.81[CEU][hapmap]
rs2084408	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2084409	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs2096362	0.81[CEU][hapmap];0.91[GIH][hapmap]
rs2313058	0.81[CEU][hapmap];0.88[GIH][hapmap]
rs4074307	0.80[CEU][hapmap]
rs4898352	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs4898358	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs4898406	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs4898407	0.81[CHB][hapmap]
rs4898408	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4898413	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945133	0.81[CEU][hapmap]
rs5945134	0.81[CEU][hapmap]
rs5945279	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs5945281	0.81[CEU][hapmap]
rs5945289	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs5945300	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs5945301	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs5986902	0.81[CEU][hapmap]
rs5986908	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs5987077	0.81[CEU][hapmap];0.91[GIH][hapmap]
rs5987079	0.81[CEU][hapmap];0.91[GIH][hapmap]
rs5987087	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5987090	0.82[CHB][hapmap]
rs5987092	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs5987094	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6642218	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6649617	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs7051718	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7472099	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7879736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs895744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs895745	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs965691	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154300600-154318600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chrX:154300600-154325600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chrX:154300600-154329400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:154300600-154331800	Weak transcription	Rectal Smooth Muscle	rectum
5	chrX:154300600-154350000	Weak transcription	Right Ventricle	heart
6	chrX:154300600-154351200	Weak transcription	Brain Cingulate Gyrus	brain
7	chrX:154300600-154355000	Weak transcription	Aorta	Aorta
8	chrX:154300800-154329800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chrX:154300800-154348000	Weak transcription	HSMM	muscle
10	chrX:154300800-154348200	Weak transcription	Osteobl	bone
11	chrX:154300800-154350800	Weak transcription	NHDF-Ad	bronchial
12	chrX:154300800-154351600	Weak transcription	Colonic Mucosa	Colon
13	chrX:154300800-154353400	Weak transcription	HSMMtube	muscle
14	chrX:154301000-154319000	Weak transcription	Fetal Heart	heart
15	chrX:154301000-154319400	Weak transcription	Pancreas	Pancrea
16	chrX:154301200-154333600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chrX:154301200-154340800	Weak transcription	Brain Germinal Matrix	brain
18	chrX:154301200-154347800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chrX:154301200-154354200	Weak transcription	Esophagus	oesophagus
20	chrX:154301400-154325200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chrX:154302400-154338600	Weak transcription	HepG2	liver
22	chrX:154303800-154317600	Weak transcription	NHEK	skin
23	chrX:154304200-154326000	Weak transcription	NHLF	lung
24	chrX:154306000-154344800	Weak transcription	Primary T cells from cord blood	blood
25	chrX:154306200-154340600	Weak transcription	Psoas Muscle	Psoas
26	chrX:154306400-154317600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chrX:154306400-154323000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chrX:154306400-154346800	Weak transcription	Gastric	stomach
29	chrX:154306400-154349800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chrX:154306600-154329200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chrX:154306800-154350400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chrX:154307000-154321000	Weak transcription	Brain Substantia Nigra	brain
33	chrX:154307000-154328400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chrX:154307000-154332800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chrX:154307000-154349600	Weak transcription	Ovary	ovary
36	chrX:154307000-154349600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chrX:154307200-154317600	Weak transcription	Placenta	Placenta
38	chrX:154307400-154351000	Weak transcription	Hela-S3	cervix
39	chrX:154307600-154350400	Weak transcription	Colon Smooth Muscle	Colon
40	chrX:154307800-154315800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chrX:154307800-154317800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chrX:154307800-154317800	Weak transcription	Primary B cells from cord blood	blood
43	chrX:154307800-154320600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chrX:154307800-154326400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chrX:154307800-154329600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chrX:154307800-154350000	Weak transcription	NH-A	brain
47	chrX:154307800-154350400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chrX:154307800-154352800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chrX:154307800-154357400	Weak transcription	Brain Hippocampus Middle	brain
50	chrX:154308000-154317600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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