Variant report

Variant	rs1470586
Chromosome Location	chrX:154238676-154238677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:154237584..154240468-chrX:154272275..154274098,2	K562	blood:
2	chrX:154215793..154218020-chrX:154234791..154238814,3	MCF-7	breast:
3	chrX:154234892..154240215-chrX:154243638..154246938,5	MCF-7	breast:
4	chrX:154237615..154239612-chrX:154240323..154242372,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1050705	0.88[CHD][hapmap]
rs1075950	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1472977	0.81[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs17051889	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1936645	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2084408	0.88[MEX][hapmap]
rs2084409	0.91[GIH][hapmap]
rs2096362	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs2313058	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs4074307	0.81[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs4898352	0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs4898358	0.93[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs4898397	1.00[JPT][hapmap]
rs4898406	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs4898407	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap]
rs4898408	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs5945133	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs5945250	1.00[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap]
rs5945279	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap]
rs5945281	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945287	0.81[CEU][hapmap];0.84[GIH][hapmap]
rs5945289	0.93[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs5945300	0.93[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs5945301	0.93[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap]
rs5986902	1.00[CEU][hapmap]
rs5986908	0.94[GIH][hapmap]
rs5987077	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs5987079	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs5987087	0.88[MEX][hapmap]
rs5987092	0.94[GIH][hapmap]
rs6642218	0.88[MEX][hapmap]
rs6643622	0.89[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs6649617	0.94[GIH][hapmap]
rs7051718	0.93[CEU][hapmap]
rs895744	0.82[MEX][hapmap]
rs895745	0.88[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1470586	PLXNA3	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154235400-154239000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chrX:154235400-154239200	Enhancers	Liver	Liver
3	chrX:154236800-154245000	Weak transcription	Left Ventricle	heart
4	chrX:154236800-154254200	Weak transcription	Pancreas	Pancrea
5	chrX:154238000-154239200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chrX:154238200-154238800	Enhancers	Adipose Nuclei	Adipose

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