Variant report

Variant	rs5945250
Chromosome Location	chrX:154059412-154059413
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chrX:154059377-154059669	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:154041365..154043169-chrX:154056932..154059655,2	K562	blood:
2	chrX:154040429..154043169-chrX:154058155..154060160,2	K562	blood:

Variant related genes	Relation type
SMIM9	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1050705	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap]
rs1075950	1.00[JPT][hapmap]
rs1126762	0.81[CEU][hapmap];0.89[CHD][hapmap];0.88[MEX][hapmap]
rs1470586	1.00[CEU][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap]
rs1472977	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap]
rs17051889	1.00[CEU][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs1848762	0.81[CEU][hapmap];0.89[CHD][hapmap];0.88[MEX][hapmap]
rs1936645	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2048294	0.81[CEU][hapmap]
rs2096362	0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs2221730	0.81[CEU][hapmap];0.89[CHD][hapmap];0.88[MEX][hapmap]
rs2664161	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap]
rs2664167	0.83[CEU][hapmap]
rs2728538	0.93[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap]
rs4074307	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs4898352	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs4898396	0.81[CEU][hapmap];0.89[CHD][hapmap];0.88[MEX][hapmap]
rs4898397	1.00[JPT][hapmap]
rs4898398	0.84[GIH][hapmap]
rs5986902	1.00[CEU][hapmap]
rs5987077	0.89[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs5987079	0.89[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs6643622	0.88[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5945250	PLXNA3	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154055600-154061200	Enhancers	K562	blood

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