Variant report

Variant	rs2221730
Chromosome Location	chrX:154019083-154019084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrX:154018930-154024370	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	X:154015910-154019964..X:154053104-154056925	H1-hESC	embryonic stem cell:	embryo
2	X:153614328-153625659..X:154015910-154019964	K562	blood:
3	X:153657611-153671976..X:154015910-154019964	Hela-S3	cervix:
4	X:153924052-153929777..X:154015910-154019964	H1-hESC	embryonic stem cell:	embryo
5	chrX:154012929..154015228-chrX:154016406..154019634,3	MCF-7	breast:
6	chrX:154009150..154011262-chrX:154017515..154020053,2	MCF-7	breast:
7	X:153719993-153730954..X:154015910-154019964	K562	blood:

No data

Variant related genes	Relation type
MPP1	TF binding region
ENSG00000160219	Chromatin interaction
ENSG00000203879	Chromatin interaction
ENSG00000264783	Chromatin interaction
ENSG00000203870	Chromatin interaction
ENSG00000130830	Chromatin interaction
ENSG00000071553	Chromatin interaction
ENSG00000264484	Chromatin interaction
ENSG00000264631	Chromatin interaction
ENSG00000147403	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1050705	0.89[CHD][hapmap]
rs1126762	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1472977	0.81[MEX][hapmap]
rs1848762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.96[TSI][hapmap];0.87[YRI][hapmap]
rs2048294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2664161	0.81[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs2664167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2728538	0.87[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs4074307	0.89[CHD][hapmap]
rs4898352	0.89[CHD][hapmap]
rs4898396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5945250	0.81[CEU][hapmap];0.89[CHD][hapmap];0.88[MEX][hapmap]
rs5986902	0.81[CEU][hapmap]
rs6643620	0.81[TSI][hapmap]
rs6643622	0.89[CHD][hapmap]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153995800-154023000	Weak transcription	Psoas Muscle	Psoas
2	chrX:154004600-154032400	Weak transcription	Small Intestine	intestine
3	chrX:154005400-154027800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chrX:154005600-154028800	Weak transcription	Brain Anterior Caudate	brain
5	chrX:154005800-154019400	Weak transcription	Fetal Kidney	kidney
6	chrX:154005800-154027800	Weak transcription	Brain Cingulate Gyrus	brain
7	chrX:154006000-154027400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chrX:154006200-154028000	Weak transcription	Left Ventricle	heart
9	chrX:154006200-154033200	Weak transcription	Aorta	Aorta
10	chrX:154006400-154027200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chrX:154006400-154027800	Weak transcription	Esophagus	oesophagus
12	chrX:154006600-154019400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chrX:154008000-154027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chrX:154008400-154025400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chrX:154008800-154027600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chrX:154009400-154020600	Weak transcription	A549	lung
17	chrX:154009600-154027800	Weak transcription	Brain Hippocampus Middle	brain
18	chrX:154009800-154031800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chrX:154010000-154027800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chrX:154010000-154027800	Weak transcription	Stomach Smooth Muscle	stomach
21	chrX:154010000-154028000	Weak transcription	Fetal Intestine Large	intestine
22	chrX:154010000-154030200	Weak transcription	Lung	lung
23	chrX:154010400-154021800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chrX:154010400-154027400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chrX:154010800-154027400	Weak transcription	Brain Angular Gyrus	brain
26	chrX:154010800-154032800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chrX:154011000-154027200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chrX:154012400-154025200	Weak transcription	Primary B cells from cord blood	blood
29	chrX:154012600-154020000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chrX:154012800-154022200	Weak transcription	HepG2	liver
31	chrX:154012800-154027400	Weak transcription	Primary T cells from cord blood	blood
32	chrX:154013200-154027200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chrX:154014400-154020400	Weak transcription	Fetal Stomach	stomach
34	chrX:154014600-154020400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chrX:154014600-154022600	Weak transcription	Pancreas	Pancrea
36	chrX:154014600-154024600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chrX:154014600-154026000	Weak transcription	Thymus	Thymus
38	chrX:154014600-154026200	Weak transcription	Dnd41	blood
39	chrX:154014600-154027400	Weak transcription	Fetal Intestine Small	intestine
40	chrX:154014800-154019600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chrX:154014800-154020400	Weak transcription	Duodenum Mucosa	Duodenum
42	chrX:154014800-154027800	Weak transcription	Placenta	Placenta
43	chrX:154015000-154024600	Weak transcription	Primary hematopoietic stem cells	blood
44	chrX:154015600-154020600	Strong transcription	Fetal Thymus	thymus
45	chrX:154015800-154020800	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chrX:154016000-154020000	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chrX:154016000-154021000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chrX:154017400-154021200	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chrX:154017800-154019400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chrX:154018200-154019200	Strong transcription	K562	blood

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