Variant report
| Variant | rs4898397 |
|---|---|
| Chromosome Location | chrX:154062431-154062432 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CHD2 | chrX:154062285-154062464 | K562 | blood: | n/a | n/a |
| 2 | EP300 | chrX:154062096-154062449 | K562 | blood: | n/a | n/a |
| 3 | BHLHE40 | chrX:154062413-154062491 | GM12878 | blood: | n/a | n/a |
| 4 | MAFK | chrX:154062064-154062631 | K562 | blood: | n/a | n/a |
| No data |
(count:8 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | X:153755323-153771683..X:154061475-154062524 | K562 | blood: | |
| 2 | chrX:154027860..154029901-chrX:154060710..154062835,2 | MCF-7 | breast: | |
| 3 | X:153625659-153635385..X:154061475-154062524 | K562 | blood: | |
| 4 | X:154027387-154034565..X:154061475-154062524 | K562 | blood: | |
| 5 | X:153967468-153979902..X:154061475-154062524 | K562 | blood: | |
| 6 | chrX:153979169..153981686-chrX:154060668..154063073,4 | K562 | blood: | |
| 7 | X:153586280-153597086..X:154061475-154062524 | K562 | blood: | |
| 8 | X:154013320-154015910..X:154061475-154062524 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SMIM9 | TF binding region |
| ENSG00000207165 | Chromatin interaction |
| ENSG00000147403 | Chromatin interaction |
| ENSG00000160219 | Chromatin interaction |
| ENSG00000160211 | Chromatin interaction |
| ENSG00000196924 | Chromatin interaction |
| ENSG00000130830 | Chromatin interaction |
| ENSG00000013563 | Chromatin interaction |
| ENSG00000073009 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1470586 | 1.00[JPT][hapmap] |
| rs1472977 | 1.00[JPT][hapmap] |
| rs17051889 | 1.00[JPT][hapmap] |
| rs17052003 | 0.89[CEU][hapmap] |
| rs1800533 | 0.81[CEU][hapmap] |
| rs2096362 | 1.00[JPT][hapmap] |
| rs4074307 | 1.00[JPT][hapmap] |
| rs4898352 | 1.00[JPT][hapmap] |
| rs4898398 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5945218 | 0.81[CEU][hapmap] |
| rs5945250 | 1.00[JPT][hapmap] |
| rs5987077 | 1.00[JPT][hapmap] |
| rs5987079 | 1.00[JPT][hapmap] |
| rs6643622 | 1.00[JPT][hapmap] |
| rs6643707 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:154061600-154063600 | Enhancers | K562 | blood |
