Variant report

Variant	rs1800533
Chromosome Location	chrX:154005148-154005149
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:154002883..154007031-chrX:154012489..154015250,4	MCF-7	breast:
2	chrX:153989640..153999941-chrX:154001277..154007820,19	MCF-7	breast:
3	X:153719993-153730954..X:154002691-154005706	K562	blood:
4	chrX:154000868..154005734-chrX:154008040..154014234,8	MCF-7	breast:
5	chrX:154004846..154006580-chrX:154061377..154064234,2	MCF-7	breast:
6	chrX:154003444..154005792-chrX:154020416..154023399,3	MCF-7	breast:
7	chr1:35646993..35648722-chrX:154003170..154005333,2	K562	blood:
8	X:153614328-153625659..X:154002691-154005706	K562	blood:

No data

Variant related genes	Relation type
ENSG00000147403	Chromatin interaction
ENSG00000264783	Chromatin interaction
ENSG00000264631	Chromatin interaction
ENSG00000203870	Chromatin interaction
ENSG00000206948	Chromatin interaction
ENSG00000130826	Chromatin interaction
ENSG00000116560	Chromatin interaction
ENSG00000130830	Chromatin interaction
ENSG00000264484	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17052003	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs1848763	0.85[GIH][hapmap]
rs2063320	1.00[GIH][hapmap]
rs2664167	1.00[JPT][hapmap]
rs2664169	0.82[GIH][hapmap]
rs2664170	0.85[GIH][hapmap]
rs2728526	0.85[GIH][hapmap]
rs2728725	0.85[GIH][hapmap]
rs4898389	1.00[CHB][hapmap]
rs4898397	0.81[CEU][hapmap]
rs4898398	1.00[CEU][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap]
rs5945218	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs5987015	0.85[GIH][hapmap]
rs5987016	0.85[GIH][hapmap]
rs6643707	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7879049	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1800533	LAGE3	cis	lymphoblastoid	seeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153992200-154013600	Weak transcription	Fetal Brain Male	brain
2	chrX:153992200-154014400	Weak transcription	Right Atrium	heart
3	chrX:153993000-154007200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chrX:153993200-154005600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chrX:153993200-154005600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chrX:153993200-154005800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
7	chrX:153993200-154005800	Strong transcription	H1 Cell Line	embryonic stem cell
8	chrX:153993200-154005800	Strong transcription	HSMM	muscle
9	chrX:153993200-154006000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chrX:153993200-154006000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chrX:153993200-154006000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chrX:153993200-154006600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chrX:153993200-154007200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chrX:153993200-154008000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chrX:153993200-154008400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chrX:153993200-154010200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chrX:153993200-154010200	Strong transcription	Placenta	Placenta
18	chrX:153993200-154011600	Strong transcription	Fetal Thymus	thymus
19	chrX:153993200-154012200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chrX:153993200-154012200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chrX:153993400-154005600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chrX:153993400-154005800	Strong transcription	Fetal Muscle Leg	muscle
23	chrX:153993400-154006200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chrX:153993400-154006200	Strong transcription	Primary B cells from peripheral blood	blood
25	chrX:153993400-154007600	Strong transcription	Fetal Intestine Large	intestine
26	chrX:153993400-154008200	Strong transcription	A549	lung
27	chrX:153993600-154005400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chrX:153993600-154005800	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chrX:153993600-154006400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chrX:153993600-154006400	Strong transcription	Osteobl	bone
31	chrX:153993600-154008000	Strong transcription	Duodenum Mucosa	Duodenum
32	chrX:153993800-154006000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chrX:153993800-154011200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chrX:153994400-154008000	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chrX:153995800-154023000	Weak transcription	Psoas Muscle	Psoas
36	chrX:153996000-154011400	Strong transcription	Dnd41	blood
37	chrX:153997400-154005800	Strong transcription	Rectal Smooth Muscle	rectum
38	chrX:153998400-154011800	Weak transcription	GM12878-XiMat	blood
39	chrX:153999000-154011800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chrX:154000000-154005400	Strong transcription	Adipose Nuclei	Adipose
41	chrX:154000600-154005800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chrX:154000600-154014000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chrX:154000800-154005800	Strong transcription	NHEK	skin
44	chrX:154001000-154005400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chrX:154001000-154005400	Strong transcription	Pancreas	Pancrea
46	chrX:154001000-154006000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chrX:154001000-154006400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
48	chrX:154001000-154007800	Strong transcription	Liver	Liver
49	chrX:154001400-154010800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chrX:154001800-154005800	Strong transcription	Duodenum Smooth Muscle	Duodenum

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