Variant report

Variant	rs7879049
Chromosome Location	chrX:153829693-153829694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:153825422..153827737-chrX:153828218..153830991,2	K562	blood:
2	chrX:153826930..153829877-chrX:153833885..153836886,3	MCF-7	breast:
3	chrX:153826650..153830451-chrX:153834350..153838569,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232155	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12392447	0.81[CEU][hapmap]
rs17052003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1800533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs2063320	0.94[GIH][hapmap]
rs2071429	1.00[CHB][hapmap]
rs2472393	1.00[CHB][hapmap]
rs2472394	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs2664167	1.00[JPT][hapmap]
rs4898389	1.00[CHB][hapmap]
rs5945100	0.90[CEU][hapmap];0.83[CHD][hapmap];0.85[TSI][hapmap]
rs5945195	0.81[CEU][hapmap]
rs5945218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519042	chrX:153348431-153829693	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
2	nsv532962	chrX:153564946-153870337	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
3	nsv532964	chrX:153622940-153854307	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv995104	chrX:153731421-153832724	Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	esv3648994	chrX:153829693-153919915	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv518228	chrX:153829693-153919915	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153825400-153832000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chrX:153828000-153829800	Enhancers	HMEC	breast
3	chrX:153828000-153833000	Enhancers	HSMMtube	muscle
4	chrX:153828200-153829800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chrX:153828200-153831800	Weak transcription	Primary hematopoietic stem cells	blood
6	chrX:153828400-153829800	Enhancers	Muscle Satellite Cultured Cells	--
7	chrX:153828400-153830200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chrX:153828400-153830200	Flanking Active TSS	Hela-S3	cervix
9	chrX:153828400-153830200	Enhancers	NHDF-Ad	bronchial
10	chrX:153828400-153830200	Enhancers	NHEK	skin
11	chrX:153828400-153835000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chrX:153828600-153831000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chrX:153828600-153833400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chrX:153828800-153831600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chrX:153828800-153833200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chrX:153829000-153831800	Weak transcription	A549	lung
17	chrX:153829000-153832000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chrX:153829200-153831600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chrX:153829400-153829800	Enhancers	Osteobl	bone
20	chrX:153829400-153830000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chrX:153829400-153830200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chrX:153829400-153830400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chrX:153829400-153830600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chrX:153829400-153833000	Enhancers	HSMM	muscle
25	chrX:153829600-153831600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chrX:153829600-153831800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chrX:153829600-153832000	Weak transcription	NH-A	brain

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