Variant report

Variant	rs4898389
Chromosome Location	chrX:153827637-153827638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:153826930..153829877-chrX:153833885..153836886,3	MCF-7	breast:
2	chrX:153823046..153825969-chrX:153827048..153829481,4	MCF-7	breast:
3	chrX:153825422..153827737-chrX:153828218..153830991,2	K562	blood:
4	chrX:153826650..153830451-chrX:153834350..153838569,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232155	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1050047	0.82[CEU][hapmap]
rs12392447	0.91[CEU][hapmap];0.80[TSI][hapmap]
rs17052003	1.00[CHB][hapmap]
rs1800533	1.00[CHB][hapmap]
rs2071429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2315325	0.82[CEU][hapmap]
rs2472393	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs2472394	1.00[CHB][hapmap]
rs5945100	0.82[CEU][hapmap];0.91[GIH][hapmap]
rs5945195	0.91[CEU][hapmap]
rs5945218	1.00[CHB][hapmap]
rs5945429	0.80[ASW][hapmap];0.82[CEU][hapmap]
rs5945431	0.82[CEU][hapmap]
rs5945433	0.82[CEU][hapmap]
rs5986981	0.82[CEU][hapmap]
rs5987266	0.82[CEU][hapmap]
rs5987267	0.82[CEU][hapmap]
rs7051615	0.82[CEU][hapmap]
rs7057286	0.82[CEU][hapmap]
rs7879049	1.00[CHB][hapmap]
rs7886727	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528291	chrX:152864376-153827637	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases
2	nsv519042	chrX:153348431-153829693	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
3	nsv532962	chrX:153564946-153870337	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
4	nsv532964	chrX:153622940-153854307	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
5	nsv995104	chrX:153731421-153832724	Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153825000-153828000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chrX:153825000-153828400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chrX:153825200-153828000	Weak transcription	Fetal Thymus	thymus
4	chrX:153825400-153827800	Weak transcription	HSMM	muscle
5	chrX:153825400-153828000	Weak transcription	HSMMtube	muscle
6	chrX:153825400-153828200	Weak transcription	NH-A	brain
7	chrX:153825400-153828400	Weak transcription	Osteobl	bone
8	chrX:153825400-153828600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chrX:153825400-153832000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chrX:153825600-153828400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chrX:153825800-153828000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chrX:153827200-153828200	Enhancers	Primary hematopoietic stem cells	blood
13	chrX:153827200-153829400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chrX:153827400-153828400	Enhancers	Hela-S3	cervix
15	chrX:153827600-153828600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chrX:153827600-153828800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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