Variant report
| Variant | rs17052003 |
|---|---|
| Chromosome Location | chrX:153885769-153885770 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:7)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:7 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | X:153771683-153779571..X:153882988-153886134 | GM12878 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CTAG2 | TF binding region |
| ENSG00000073009 | Chromatin interaction |
| ENSG00000160211 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs12392447 | 0.81[CEU][hapmap] |
| rs1800533 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap] |
| rs2063320 | 0.94[GIH][hapmap] |
| rs2071429 | 1.00[CHB][hapmap] |
| rs2472393 | 1.00[CHB][hapmap] |
| rs2472394 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap] |
| rs2664167 | 1.00[JPT][hapmap] |
| rs4898389 | 1.00[CHB][hapmap] |
| rs4898397 | 0.89[CEU][hapmap] |
| rs4898398 | 1.00[CEU][hapmap] |
| rs5945100 | 0.90[CEU][hapmap];0.83[CHD][hapmap];0.85[TSI][hapmap] |
| rs5945195 | 0.81[CEU][hapmap] |
| rs5945218 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap] |
| rs6643707 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs7879049 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3648994 | chrX:153829693-153919915 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv518228 | chrX:153829693-153919915 | Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:153882400-153888800 | Weak transcription | Right Atrium | heart |
