Variant report

Variant	rs2063320
Chromosome Location	chrX:153968860-153968861
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:153966864..153969538-chrX:153971297..153973962,2	K562	blood:
2	X:153657611-153671976..X:153967468-153979902	H1-hESC	embryonic stem cell:	embryo
3	X:153614328-153625659..X:153967468-153979902	K562	blood:
4	X:153967468-153979902..X:154053104-154056925	K562	blood:
5	chrX:153966849..153975456-chrX:153975599..153983123,12	K562	blood:
6	chrX:153964172..153966318-chrX:153967232..153969867,2	K562	blood:
7	chrX:153966849..153968927-chrX:153981623..153983468,2	K562	blood:
8	chrX:153962966..153968885-chrX:153976280..153980562,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000203870	Chromatin interaction
ENSG00000160219	Chromatin interaction
ENSG00000071553	Chromatin interaction
ENSG00000203879	Chromatin interaction
ENSG00000147403	Chromatin interaction

rs_ID	r²[population]
rs17052003	0.94[GIH][hapmap]
rs1800533	1.00[GIH][hapmap]
rs1848763	0.85[GIH][hapmap];0.88[JPT][hapmap]
rs2472394	0.94[GIH][hapmap]
rs2664169	0.82[GIH][hapmap]
rs2664170	0.85[GIH][hapmap];0.88[JPT][hapmap]
rs2728526	0.85[GIH][hapmap];0.88[JPT][hapmap]
rs2728725	0.85[GIH][hapmap];0.88[JPT][hapmap]
rs2728729	0.87[CHB][hapmap];0.84[MEX][hapmap]
rs5945218	0.94[GIH][hapmap]
rs5987015	0.85[GIH][hapmap];0.88[JPT][hapmap]
rs5987016	0.85[GIH][hapmap];0.88[JPT][hapmap]
rs7879049	0.94[GIH][hapmap]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153957200-153969200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chrX:153963000-153969800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chrX:153963200-153969200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chrX:153963200-153969400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chrX:153963400-153969800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chrX:153963600-153969400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chrX:153963600-153970600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chrX:153964200-153969000	Weak transcription	Primary B cells from peripheral blood	blood
9	chrX:153966000-153977200	Weak transcription	Fetal Heart	heart
10	chrX:153966200-153977000	Weak transcription	Left Ventricle	heart
11	chrX:153966600-153969400	Enhancers	K562	blood
12	chrX:153966600-153972200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chrX:153967200-153969000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chrX:153968200-153969200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chrX:153968400-153969200	Enhancers	Primary hematopoietic stem cells	blood
16	chrX:153968600-153969200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chrX:153968600-153969200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chrX:153968600-153969400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chrX:153968600-153969600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chrX:153968600-153971800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chrX:153968800-153969000	Enhancers	Thymus	Thymus
22	chrX:153968800-153969000	Flanking Active TSS	Dnd41	blood
23	chrX:153968800-153969200	Enhancers	Fetal Thymus	thymus
24	chrX:153968800-153970200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chrX:153968800-153970400	Enhancers	Primary T cells fromperipheralblood	blood

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