Variant report

Variant	rs2728729
Chromosome Location	chrX:154009347-154009348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:153989931..153993439-chrX:154009341..154014143,4	MCF-7	breast:
2	chrX:154000868..154005734-chrX:154008040..154014234,8	MCF-7	breast:
3	chrX:154008359..154010952-chrX:154012874..154014654,2	MCF-7	breast:
4	chrX:154009150..154011262-chrX:154017515..154020053,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130826	Chromatin interaction
ENSG00000130830	Chromatin interaction
ENSG00000206693	Chromatin interaction

rs_ID	r²[population]
rs10127172	0.80[JPT][hapmap]
rs2063320	0.87[CHB][hapmap];0.84[MEX][hapmap]
rs4326559	0.80[JPT][hapmap]
rs4431759	0.80[JPT][hapmap]
rs4526543	0.80[JPT][hapmap]
rs5945222	0.80[JPT][hapmap]
rs5945223	0.80[JPT][hapmap]
rs5945224	0.80[JPT][hapmap]
rs5987005	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs5987011	0.80[JPT][hapmap]
rs6643615	0.88[CHB][hapmap]
rs884840	0.80[JPT][hapmap]

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153992200-154013600	Weak transcription	Fetal Brain Male	brain
2	chrX:153992200-154014400	Weak transcription	Right Atrium	heart
3	chrX:153993200-154010200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chrX:153993200-154010200	Strong transcription	Placenta	Placenta
5	chrX:153993200-154011600	Strong transcription	Fetal Thymus	thymus
6	chrX:153993200-154012200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chrX:153993200-154012200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chrX:153993800-154011200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chrX:153995800-154023000	Weak transcription	Psoas Muscle	Psoas
10	chrX:153996000-154011400	Strong transcription	Dnd41	blood
11	chrX:153998400-154011800	Weak transcription	GM12878-XiMat	blood
12	chrX:153999000-154011800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chrX:154000600-154014000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chrX:154001400-154010800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chrX:154002000-154010200	Strong transcription	Spleen	Spleen
16	chrX:154002200-154009400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chrX:154002200-154010200	Strong transcription	Thymus	Thymus
18	chrX:154002200-154010800	Strong transcription	Brain Angular Gyrus	brain
19	chrX:154002600-154010000	Strong transcription	Stomach Smooth Muscle	stomach
20	chrX:154003800-154009400	Weak transcription	Brain Substantia Nigra	brain
21	chrX:154003800-154011200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chrX:154003800-154012000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chrX:154003800-154014000	Weak transcription	Fetal Lung	lung
24	chrX:154004200-154012000	Weak transcription	Primary B cells from cord blood	blood
25	chrX:154004200-154012600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chrX:154004400-154009400	Weak transcription	Fetal Heart	heart
27	chrX:154004600-154011000	Weak transcription	Ovary	ovary
28	chrX:154004600-154012000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chrX:154004600-154032400	Weak transcription	Small Intestine	intestine
30	chrX:154004800-154013400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chrX:154005000-154009800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chrX:154005000-154010600	Weak transcription	NHLF	lung
33	chrX:154005000-154011600	Strong transcription	K562	blood
34	chrX:154005000-154013000	Weak transcription	Gastric	stomach
35	chrX:154005200-154014200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chrX:154005400-154012200	Weak transcription	HepG2	liver
37	chrX:154005400-154014000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chrX:154005400-154015000	Weak transcription	NH-A	brain
39	chrX:154005400-154027800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chrX:154005600-154010600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chrX:154005600-154010800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chrX:154005600-154011000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chrX:154005600-154011800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chrX:154005600-154011800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chrX:154005600-154012000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chrX:154005600-154015000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chrX:154005600-154028800	Weak transcription	Brain Anterior Caudate	brain
48	chrX:154005800-154009400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chrX:154005800-154011800	Weak transcription	Primary T cells fromperipheralblood	blood
50	chrX:154005800-154011800	Weak transcription	Primary hematopoietic stem cells	blood

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