Variant report

Variant	rs4431759
Chromosome Location	chrX:153904473-153904474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:153900048..153901803-chrX:153902904..153904606,2	K562	blood:
2	chrX:153903769..153907661-chrX:153908042..153910580,3	K562	blood:

Variant related genes	Relation type
ENSG00000160219	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10127172	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1848763	0.89[CHB][hapmap]
rs2664170	0.89[CHB][hapmap]
rs2728526	0.89[CHB][hapmap]
rs2728530	0.85[ASW][hapmap];1.00[CHB][hapmap];0.83[MKK][hapmap]
rs2728725	0.89[CHB][hapmap]
rs2728729	0.80[JPT][hapmap]
rs28835013	1.00[LWK][hapmap]
rs4326559	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4526543	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs4898348	0.94[MEX][hapmap]
rs5945108	0.89[MEX][hapmap]
rs5945222	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5945223	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5945224	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5987005	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5987011	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs5987015	0.89[CHB][hapmap]
rs5987016	0.89[CHB][hapmap]
rs6643615	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6643711	0.83[MEX][hapmap]
rs884840	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3648994	chrX:153829693-153919915	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv518228	chrX:153829693-153919915	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153899400-153914000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chrX:153900200-153923800	Weak transcription	K562	blood
3	chrX:153901600-153905600	Weak transcription	Liver	Liver
4	chrX:153901600-153940000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chrX:153901800-153926800	Weak transcription	Primary T cells from cord blood	blood
6	chrX:153902000-153904800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chrX:153902000-153925000	Weak transcription	Primary B cells from cord blood	blood
8	chrX:153902200-153905000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chrX:153902200-153923600	Weak transcription	Fetal Heart	heart
10	chrX:153902200-153925000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chrX:153902400-153905000	Weak transcription	Primary B cells from peripheral blood	blood
12	chrX:153902600-153905600	Weak transcription	Aorta	Aorta
13	chrX:153902800-153913200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chrX:153902800-153917600	Weak transcription	Fetal Lung	lung
15	chrX:153903000-153908600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chrX:153903000-153909000	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chrX:153903000-153909600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chrX:153903000-153910400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chrX:153903000-153914600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chrX:153903200-153908600	Strong transcription	Dnd41	blood
21	chrX:153903200-153923600	Weak transcription	Fetal Muscle Leg	muscle
22	chrX:153903200-153924800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chrX:153903400-153905000	Weak transcription	Stomach Smooth Muscle	stomach
24	chrX:153903400-153905000	Weak transcription	Thymus	Thymus
25	chrX:153903400-153925200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chrX:153903600-153908600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chrX:153903600-153909400	Strong transcription	Left Ventricle	heart
28	chrX:153903800-153905200	Weak transcription	Fetal Muscle Trunk	muscle
29	chrX:153903800-153923400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chrX:153904000-153921400	Weak transcription	Primary hematopoietic stem cells	blood
31	chrX:153904200-153907000	Strong transcription	Fetal Thymus	thymus
32	chrX:153904200-153907600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chrX:153904400-153906000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chrX:153904400-153906400	Strong transcription	Right Ventricle	heart
35	chrX:153904400-153906800	Strong transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links