Variant report

Variant	rs884840
Chromosome Location	chrX:153928031-153928032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	X:153924052-153929777..X:154015910-154019964	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000130830	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10127172	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1848763	0.89[CHB][hapmap]
rs2664170	0.89[CHB][hapmap]
rs2728526	0.89[CHB][hapmap]
rs2728530	0.85[ASW][hapmap];1.00[CHB][hapmap];0.86[MKK][hapmap]
rs2728725	0.89[CHB][hapmap]
rs2728729	0.80[JPT][hapmap]
rs28835013	1.00[LWK][hapmap]
rs4326559	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4431759	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4526543	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs4898348	0.94[MEX][hapmap]
rs5945108	0.89[MEX][hapmap]
rs5945222	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5945223	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs5945224	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5987005	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5987011	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs5987015	0.89[CHB][hapmap]
rs5987016	0.89[CHB][hapmap]
rs6643615	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6643711	0.83[MEX][hapmap]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153901600-153940000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chrX:153906200-153940200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chrX:153907000-153939600	Weak transcription	Aorta	Aorta
4	chrX:153907600-153940000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chrX:153914600-153940000	Weak transcription	Lung	lung
6	chrX:153915000-153940800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chrX:153920000-153929800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chrX:153920400-153945800	Weak transcription	Colon Smooth Muscle	Colon
9	chrX:153921400-153932400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chrX:153921800-153929200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chrX:153922000-153930000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chrX:153923000-153929800	Strong transcription	Dnd41	blood
13	chrX:153923400-153929200	Strong transcription	Primary T cells fromperipheralblood	blood
14	chrX:153923400-153929600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chrX:153923400-153930000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chrX:153923600-153929200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chrX:153923800-153928600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chrX:153923800-153929200	Strong transcription	K562	blood
19	chrX:153924000-153928200	Strong transcription	Primary B cells from peripheral blood	blood
20	chrX:153924200-153955400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chrX:153924800-153928200	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chrX:153925000-153957200	Weak transcription	Brain Hippocampus Middle	brain
23	chrX:153925400-153928200	Strong transcription	Adipose Nuclei	Adipose
24	chrX:153925600-153929000	Weak transcription	Right Atrium	heart
25	chrX:153925600-153929200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chrX:153925600-153939600	Weak transcription	Right Ventricle	heart
27	chrX:153925600-153941400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chrX:153925800-153928200	Weak transcription	Gastric	stomach
29	chrX:153925800-153940400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chrX:153926000-153931800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chrX:153926200-153929400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chrX:153926200-153932200	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chrX:153926400-153928200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chrX:153926600-153928200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chrX:153926600-153928200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
36	chrX:153926800-153928400	Strong transcription	Primary T cells from cord blood	blood
37	chrX:153927000-153928200	Enhancers	H1 Cell Line	embryonic stem cell
38	chrX:153927200-153940800	Weak transcription	Fetal Muscle Leg	muscle
39	chrX:153927400-153940000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chrX:153927600-153929200	Strong transcription	Primary hematopoietic stem cells	blood
41	chrX:153927600-153939600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chrX:153927600-153939800	Weak transcription	Thymus	Thymus
43	chrX:153927600-153940000	Weak transcription	Duodenum Mucosa	Duodenum
44	chrX:153927600-153940400	Weak transcription	Primary B cells from cord blood	blood
45	chrX:153927800-153932600	Weak transcription	Stomach Smooth Muscle	stomach
46	chrX:153927800-153938600	Weak transcription	Fetal Thymus	thymus
47	chrX:153927800-153939800	Weak transcription	Fetal Muscle Trunk	muscle
48	chrX:153927800-153940200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chrX:153927800-153940200	Weak transcription	Spleen	Spleen
50	chrX:153927800-153947400	Weak transcription	Fetal Heart	heart

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