Variant report

Variant	rs5987016
Chromosome Location	chrX:153948160-153948161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:153945898..153948533-chrX:153970918..153973304,2	K562	blood:
2	chrX:153946084..153948433-chrX:153964027..153967909,3	K562	blood:
3	X:153948126-153954192..X:153967468-153979902	Hela-S3	cervix:
4	chrX:153946077..153948642-chrX:153990257..153991888,2	K562	blood:
5	X:153948126-153954192..X:153989469-153994716	Hela-S3	cervix:
6	X:153681712-153701576..X:153948126-153954192	Hela-S3	cervix:
7	X:153948126-153954192..X:154109708-154117881	Hela-S3	cervix:
8	chrX:153945510..153948324-chrX:153977312..153980587,3	K562	blood:
9	chrX:153945498..153948433-chrX:153965019..153967909,3	K562	blood:
10	chrX:153945382..153951855-chrX:153952436..153958335,9	K562	blood:
11	chrX:153945866..153948564-chrX:153975636..153977588,2	K562	blood:
12	chrX:153946602..153948265-chrX:153948807..153951805,3	K562	blood:
13	chrX:153946824..153948954-chrX:153978992..153982006,3	K562	blood:
14	X:153532787-153537523..X:153948126-153954192	Hela-S3	cervix:
15	X:153586280-153597086..X:153948126-153954192	Hela-S3	cervix:
16	X:153948126-153954192..X:154298909-154305587	Hela-S3	cervix:
17	chrX:153943407..153945840-chrX:153947383..153949982,2	K562	blood:
18	X:153948126-153954192..X:154015910-154019964	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000197932	Chromatin interaction
ENSG00000185515	Chromatin interaction
ENSG00000182712	Chromatin interaction
ENSG00000130830	Chromatin interaction
ENSG00000185010	Chromatin interaction
ENSG00000198082	Chromatin interaction
ENSG00000130827	Chromatin interaction
ENSG00000007350	Chromatin interaction
ENSG00000130826	Chromatin interaction
ENSG00000214827	Chromatin interaction
ENSG00000196924	Chromatin interaction
ENSG00000160219	Chromatin interaction
ENSG00000221533	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10127172	0.89[CHB][hapmap]
rs1800533	0.85[GIH][hapmap]
rs1848763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2063320	0.85[GIH][hapmap];0.88[JPT][hapmap]
rs2664169	0.94[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2664170	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs2728526	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2728530	0.89[CHB][hapmap]
rs2728538	0.81[MEX][hapmap]
rs2728725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap]
rs4326559	0.89[CHB][hapmap]
rs4431759	0.89[CHB][hapmap]
rs4526543	0.89[CHB][hapmap]
rs5945222	0.89[CHB][hapmap]
rs5945223	0.89[CHB][hapmap]
rs5945224	0.89[CHB][hapmap]
rs5945232	0.88[CEU][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap]
rs5945233	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs5987005	0.88[CHB][hapmap]
rs5987011	0.89[CHB][hapmap]
rs5987015	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6643615	0.88[CHB][hapmap]
rs6643620	0.88[MEX][hapmap]
rs884840	0.89[CHB][hapmap]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153924200-153955400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chrX:153925000-153957200	Weak transcription	Brain Hippocampus Middle	brain
3	chrX:153936400-153955400	Weak transcription	Psoas Muscle	Psoas
4	chrX:153941400-153961000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chrX:153941600-153957000	Weak transcription	Aorta	Aorta
6	chrX:153944200-153948200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chrX:153944800-153948600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chrX:153944800-153950200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chrX:153945400-153948200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chrX:153945400-153948400	Enhancers	Fetal Thymus	thymus
11	chrX:153945400-153948600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chrX:153945400-153948600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chrX:153945400-153948600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chrX:153945400-153949200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chrX:153945600-153948200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chrX:153945600-153948400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chrX:153945600-153948400	Enhancers	Primary B cells from peripheral blood	blood
18	chrX:153945600-153948600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chrX:153945800-153948200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chrX:153945800-153948200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chrX:153945800-153948200	Enhancers	Placenta	Placenta
22	chrX:153945800-153948200	Enhancers	NH-A	brain
23	chrX:153945800-153948200	Enhancers	Osteobl	bone
24	chrX:153945800-153948600	Enhancers	HUVEC	blood vessel
25	chrX:153946000-153948200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chrX:153946000-153948200	Enhancers	GM12878-XiMat	blood
27	chrX:153946000-153948400	Enhancers	Muscle Satellite Cultured Cells	--
28	chrX:153946000-153948600	Flanking Active TSS	Dnd41	blood
29	chrX:153946000-153952800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chrX:153946200-153948200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chrX:153946200-153948400	Enhancers	Primary T cells from cord blood	blood
32	chrX:153946400-153948200	Enhancers	Primary T cells fromperipheralblood	blood
33	chrX:153946400-153948200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chrX:153946400-153950000	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chrX:153946800-153948600	Enhancers	Duodenum Mucosa	Duodenum
36	chrX:153946800-153956400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chrX:153947200-153948200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chrX:153947400-153948200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chrX:153947400-153948200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chrX:153947400-153948200	Enhancers	Hela-S3	cervix
41	chrX:153947600-153949400	Enhancers	Primary monocytes fromperipheralblood	blood
42	chrX:153947800-153948600	Enhancers	K562	blood
43	chrX:153947800-153949600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chrX:153947800-153951800	Weak transcription	Left Ventricle	heart
45	chrX:153947800-153951800	Weak transcription	Lung	lung
46	chrX:153947800-153952200	Weak transcription	Right Ventricle	heart
47	chrX:153947800-153953400	Weak transcription	Right Atrium	heart
48	chrX:153947800-153955400	Weak transcription	Fetal Muscle Leg	muscle
49	chrX:153948000-153948200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chrX:153948000-153948400	Enhancers	Primary B cells from cord blood	blood

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