Variant report

Variant	rs5945233
Chromosome Location	chrX:153939325-153939326
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:153932907..153935602-chrX:153938626..153940408,2	K562	blood:
2	X:153322932-153323783..X:153935896-153940106	K562	blood:

Variant related genes	Relation type
ENSG00000169057	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1848763	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2664169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2664170	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2728526	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2728725	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs5945232	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs5987015	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs5987016	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153901600-153940000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chrX:153906200-153940200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chrX:153907000-153939600	Weak transcription	Aorta	Aorta
4	chrX:153907600-153940000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chrX:153914600-153940000	Weak transcription	Lung	lung
6	chrX:153915000-153940800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chrX:153920400-153945800	Weak transcription	Colon Smooth Muscle	Colon
8	chrX:153924200-153955400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chrX:153925000-153957200	Weak transcription	Brain Hippocampus Middle	brain
10	chrX:153925600-153939600	Weak transcription	Right Ventricle	heart
11	chrX:153925600-153941400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chrX:153925800-153940400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chrX:153927200-153940800	Weak transcription	Fetal Muscle Leg	muscle
14	chrX:153927400-153940000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chrX:153927600-153939600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chrX:153927600-153939800	Weak transcription	Thymus	Thymus
17	chrX:153927600-153940000	Weak transcription	Duodenum Mucosa	Duodenum
18	chrX:153927600-153940400	Weak transcription	Primary B cells from cord blood	blood
19	chrX:153927800-153939800	Weak transcription	Fetal Muscle Trunk	muscle
20	chrX:153927800-153940200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chrX:153927800-153940200	Weak transcription	Spleen	Spleen
22	chrX:153927800-153947400	Weak transcription	Fetal Heart	heart
23	chrX:153928000-153940000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chrX:153928000-153941400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chrX:153928200-153940600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chrX:153928200-153941000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chrX:153928200-153943000	Weak transcription	Primary B cells from peripheral blood	blood
28	chrX:153928400-153939800	Weak transcription	Primary T cells from cord blood	blood
29	chrX:153929200-153939800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chrX:153932600-153939600	Weak transcription	Primary hematopoietic stem cells	blood
31	chrX:153934000-153946800	Weak transcription	Fetal Intestine Small	intestine
32	chrX:153936400-153940400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chrX:153936400-153955400	Weak transcription	Psoas Muscle	Psoas
34	chrX:153936600-153940400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chrX:153937400-153939800	Weak transcription	Placenta	Placenta
36	chrX:153937800-153939600	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chrX:153937800-153940600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chrX:153937800-153940800	Strong transcription	Left Ventricle	heart
39	chrX:153937800-153941000	Strong transcription	Dnd41	blood
40	chrX:153938000-153939600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chrX:153938000-153941800	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chrX:153938000-153944800	Strong transcription	K562	blood
43	chrX:153938200-153941400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chrX:153938600-153940800	Strong transcription	Fetal Thymus	thymus
45	chrX:153938600-153941000	Strong transcription	Adipose Nuclei	Adipose
46	chrX:153938600-153941800	Enhancers	GM12878-XiMat	blood
47	chrX:153938800-153940800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chrX:153939000-153939400	Weak transcription	Fetal Stomach	stomach
49	chrX:153939000-153941000	Weak transcription	Fetal Lung	lung
50	chrX:153939000-153947400	Weak transcription	Liver	Liver

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