Variant report

Variant	rs5945232
Chromosome Location	chrX:153938228-153938229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	X:153322932-153323783..X:153935896-153940106	K562	blood:

Variant related genes	Relation type
ENSG00000169057	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1848763	0.88[CEU][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap]
rs2664169	0.85[ASW][hapmap];0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs2664170	0.88[CEU][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap]
rs2728526	0.88[CEU][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap]
rs2728725	0.88[CEU][hapmap];0.88[JPT][hapmap];0.84[TSI][hapmap]
rs5945233	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs5987015	0.88[CEU][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap]
rs5987016	0.88[CEU][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5945232	F8A1	cis	lymphoblastoid	seeQTL

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153901600-153940000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chrX:153906200-153940200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chrX:153907000-153939600	Weak transcription	Aorta	Aorta
4	chrX:153907600-153940000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chrX:153914600-153940000	Weak transcription	Lung	lung
6	chrX:153915000-153940800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chrX:153920400-153945800	Weak transcription	Colon Smooth Muscle	Colon
8	chrX:153924200-153955400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chrX:153925000-153957200	Weak transcription	Brain Hippocampus Middle	brain
10	chrX:153925600-153939600	Weak transcription	Right Ventricle	heart
11	chrX:153925600-153941400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chrX:153925800-153940400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chrX:153927200-153940800	Weak transcription	Fetal Muscle Leg	muscle
14	chrX:153927400-153940000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chrX:153927600-153939600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chrX:153927600-153939800	Weak transcription	Thymus	Thymus
17	chrX:153927600-153940000	Weak transcription	Duodenum Mucosa	Duodenum
18	chrX:153927600-153940400	Weak transcription	Primary B cells from cord blood	blood
19	chrX:153927800-153938600	Weak transcription	Fetal Thymus	thymus
20	chrX:153927800-153939800	Weak transcription	Fetal Muscle Trunk	muscle
21	chrX:153927800-153940200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chrX:153927800-153940200	Weak transcription	Spleen	Spleen
23	chrX:153927800-153947400	Weak transcription	Fetal Heart	heart
24	chrX:153928000-153940000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chrX:153928000-153941400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chrX:153928200-153938600	Weak transcription	Adipose Nuclei	Adipose
27	chrX:153928200-153940600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chrX:153928200-153941000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chrX:153928200-153943000	Weak transcription	Primary B cells from peripheral blood	blood
30	chrX:153928400-153939800	Weak transcription	Primary T cells from cord blood	blood
31	chrX:153929200-153939800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chrX:153932600-153939600	Weak transcription	Primary hematopoietic stem cells	blood
33	chrX:153934000-153946800	Weak transcription	Fetal Intestine Small	intestine
34	chrX:153934800-153938800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chrX:153936400-153940400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chrX:153936400-153955400	Weak transcription	Psoas Muscle	Psoas
37	chrX:153936600-153940400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chrX:153937400-153939000	Weak transcription	Stomach Smooth Muscle	stomach
39	chrX:153937400-153939800	Weak transcription	Placenta	Placenta
40	chrX:153937800-153939600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chrX:153937800-153940600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chrX:153937800-153940800	Strong transcription	Left Ventricle	heart
43	chrX:153937800-153941000	Strong transcription	Dnd41	blood
44	chrX:153938000-153939600	Strong transcription	Primary T cells fromperipheralblood	blood
45	chrX:153938000-153941800	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chrX:153938000-153944800	Strong transcription	K562	blood
47	chrX:153938200-153941400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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