Variant report

Variant	rs2664169
Chromosome Location	chrX:153939663-153939664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:153932907..153935602-chrX:153938626..153940408,2	K562	blood:
2	X:153322932-153323783..X:153935896-153940106	K562	blood:
3	chrX:153939513..153941352-chrX:153977769..153980611,2	K562	blood:

Variant related genes	Relation type
ENSG00000160219	Chromatin interaction
ENSG00000169057	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1800533	0.82[GIH][hapmap]
rs1848763	0.94[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2063320	0.82[GIH][hapmap]
rs2664170	0.94[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2728526	0.94[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2728538	0.81[MEX][hapmap]
rs2728725	0.94[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap]
rs5945232	0.85[ASW][hapmap];0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs5945233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5987015	0.94[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5987016	0.94[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6643620	0.88[MEX][hapmap]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153901600-153940000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chrX:153906200-153940200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chrX:153907600-153940000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chrX:153914600-153940000	Weak transcription	Lung	lung
5	chrX:153915000-153940800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chrX:153920400-153945800	Weak transcription	Colon Smooth Muscle	Colon
7	chrX:153924200-153955400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chrX:153925000-153957200	Weak transcription	Brain Hippocampus Middle	brain
9	chrX:153925600-153941400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chrX:153925800-153940400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chrX:153927200-153940800	Weak transcription	Fetal Muscle Leg	muscle
12	chrX:153927400-153940000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chrX:153927600-153939800	Weak transcription	Thymus	Thymus
14	chrX:153927600-153940000	Weak transcription	Duodenum Mucosa	Duodenum
15	chrX:153927600-153940400	Weak transcription	Primary B cells from cord blood	blood
16	chrX:153927800-153939800	Weak transcription	Fetal Muscle Trunk	muscle
17	chrX:153927800-153940200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chrX:153927800-153940200	Weak transcription	Spleen	Spleen
19	chrX:153927800-153947400	Weak transcription	Fetal Heart	heart
20	chrX:153928000-153940000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chrX:153928000-153941400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chrX:153928200-153940600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chrX:153928200-153941000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chrX:153928200-153943000	Weak transcription	Primary B cells from peripheral blood	blood
25	chrX:153928400-153939800	Weak transcription	Primary T cells from cord blood	blood
26	chrX:153929200-153939800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chrX:153934000-153946800	Weak transcription	Fetal Intestine Small	intestine
28	chrX:153936400-153940400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chrX:153936400-153955400	Weak transcription	Psoas Muscle	Psoas
30	chrX:153936600-153940400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chrX:153937400-153939800	Weak transcription	Placenta	Placenta
32	chrX:153937800-153940600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chrX:153937800-153940800	Strong transcription	Left Ventricle	heart
34	chrX:153937800-153941000	Strong transcription	Dnd41	blood
35	chrX:153938000-153941800	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chrX:153938000-153944800	Strong transcription	K562	blood
37	chrX:153938200-153941400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chrX:153938600-153940800	Strong transcription	Fetal Thymus	thymus
39	chrX:153938600-153941000	Strong transcription	Adipose Nuclei	Adipose
40	chrX:153938600-153941800	Enhancers	GM12878-XiMat	blood
41	chrX:153938800-153940800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chrX:153939000-153941000	Weak transcription	Fetal Lung	lung
43	chrX:153939000-153947400	Weak transcription	Liver	Liver
44	chrX:153939400-153940800	Strong transcription	Fetal Stomach	stomach
45	chrX:153939600-153940200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chrX:153939600-153940200	Strong transcription	Right Ventricle	heart
47	chrX:153939600-153940400	Strong transcription	Primary hematopoietic stem cells	blood
48	chrX:153939600-153941000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chrX:153939600-153941600	Strong transcription	Aorta	Aorta
50	chrX:153939600-153941800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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