Variant report

Variant	rs2728526
Chromosome Location	chrX:153949217-153949218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:153945551..153947746-chrX:153948618..153950353,2	MCF-7	breast:
2	X:153948126-153954192..X:153967468-153979902	Hela-S3	cervix:
3	X:153948126-153954192..X:153989469-153994716	Hela-S3	cervix:
4	X:153681712-153701576..X:153948126-153954192	Hela-S3	cervix:
5	X:153948126-153954192..X:154109708-154117881	Hela-S3	cervix:
6	chrX:153945382..153951855-chrX:153952436..153958335,9	K562	blood:
7	chrX:153946602..153948265-chrX:153948807..153951805,3	K562	blood:
8	X:153532787-153537523..X:153948126-153954192	Hela-S3	cervix:
9	X:153586280-153597086..X:153948126-153954192	Hela-S3	cervix:
10	X:153948126-153954192..X:154298909-154305587	Hela-S3	cervix:
11	chrX:153943407..153945840-chrX:153947383..153949982,2	K562	blood:
12	X:153948126-153954192..X:154015910-154019964	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000214827	Chromatin interaction
ENSG00000196924	Chromatin interaction
ENSG00000130826	Chromatin interaction
ENSG00000197932	Chromatin interaction
ENSG00000185515	Chromatin interaction
ENSG00000182712	Chromatin interaction
ENSG00000198082	Chromatin interaction
ENSG00000130827	Chromatin interaction
ENSG00000130830	Chromatin interaction
ENSG00000185010	Chromatin interaction
ENSG00000160219	Chromatin interaction
ENSG00000221533	Chromatin interaction
ENSG00000007350	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10127172	0.89[CHB][hapmap]
rs1800533	0.85[GIH][hapmap]
rs1848763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2063320	0.85[GIH][hapmap];0.88[JPT][hapmap]
rs2664169	0.94[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2664170	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs2728530	0.89[CHB][hapmap]
rs2728538	0.81[MEX][hapmap]
rs2728725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap]
rs4326559	0.89[CHB][hapmap]
rs4431759	0.89[CHB][hapmap]
rs4526543	0.89[CHB][hapmap]
rs5945222	0.89[CHB][hapmap]
rs5945223	0.89[CHB][hapmap]
rs5945224	0.89[CHB][hapmap]
rs5945232	0.88[CEU][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap]
rs5945233	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs5987005	0.88[CHB][hapmap]
rs5987011	0.89[CHB][hapmap]
rs5987015	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5987016	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6643615	0.88[CHB][hapmap]
rs6643620	0.88[MEX][hapmap]
rs884840	0.89[CHB][hapmap]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153924200-153955400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chrX:153925000-153957200	Weak transcription	Brain Hippocampus Middle	brain
3	chrX:153936400-153955400	Weak transcription	Psoas Muscle	Psoas
4	chrX:153941400-153961000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chrX:153941600-153957000	Weak transcription	Aorta	Aorta
6	chrX:153944800-153950200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chrX:153946000-153952800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chrX:153946400-153950000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chrX:153946800-153956400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chrX:153947600-153949400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chrX:153947800-153949600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chrX:153947800-153951800	Weak transcription	Left Ventricle	heart
13	chrX:153947800-153951800	Weak transcription	Lung	lung
14	chrX:153947800-153952200	Weak transcription	Right Ventricle	heart
15	chrX:153947800-153953400	Weak transcription	Right Atrium	heart
16	chrX:153947800-153955400	Weak transcription	Fetal Muscle Leg	muscle
17	chrX:153948000-153949400	Enhancers	Primary hematopoietic stem cells	blood
18	chrX:153948000-153949400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chrX:153948000-153956400	Weak transcription	Spleen	Spleen
20	chrX:153948000-153962400	Weak transcription	Thymus	Thymus
21	chrX:153948200-153949400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chrX:153948200-153949800	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chrX:153948200-153951400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chrX:153948200-153951600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chrX:153948200-153955000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chrX:153948200-153955800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chrX:153948400-153952800	Weak transcription	Primary B cells from peripheral blood	blood
28	chrX:153948400-153953400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chrX:153948400-153953600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chrX:153948400-153955800	Weak transcription	Primary B cells from cord blood	blood
31	chrX:153948400-153956400	Weak transcription	Fetal Thymus	thymus
32	chrX:153948600-153949600	Weak transcription	K562	blood
33	chrX:153948600-153949800	Enhancers	Dnd41	blood
34	chrX:153948600-153949800	Enhancers	Monocytes-CD14+_RO01746	blood
35	chrX:153948600-153950000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chrX:153948600-153951800	Weak transcription	Duodenum Mucosa	Duodenum
37	chrX:153948600-153952000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chrX:153948600-153952800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chrX:153948600-153952800	Weak transcription	HUVEC	blood vessel
40	chrX:153948600-153953400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chrX:153949200-153949800	Enhancers	Placenta	Placenta
42	chrX:153949200-153950200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chrX:153949200-153953200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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