Variant report

Variant	rs5987011
Chromosome Location	chrX:153908832-153908833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10127172	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs1848763	0.89[CHB][hapmap]
rs2664170	0.89[CHB][hapmap]
rs2728526	0.89[CHB][hapmap]
rs2728530	0.85[ASW][hapmap];1.00[CHB][hapmap];0.83[MKK][hapmap]
rs2728725	0.89[CHB][hapmap]
rs2728729	0.80[JPT][hapmap]
rs4326559	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs4431759	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs4526543	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs4898348	0.94[MEX][hapmap]
rs5945108	0.89[MEX][hapmap]
rs5945222	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs5945223	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs5945224	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs5987005	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs5987015	0.89[CHB][hapmap]
rs5987016	0.89[CHB][hapmap]
rs6643615	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6643711	0.83[MEX][hapmap]
rs884840	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3648994	chrX:153829693-153919915	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv518228	chrX:153829693-153919915	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153899400-153914000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chrX:153900200-153923800	Weak transcription	K562	blood
3	chrX:153901600-153940000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chrX:153901800-153926800	Weak transcription	Primary T cells from cord blood	blood
5	chrX:153902000-153925000	Weak transcription	Primary B cells from cord blood	blood
6	chrX:153902200-153923600	Weak transcription	Fetal Heart	heart
7	chrX:153902200-153925000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chrX:153902800-153913200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chrX:153902800-153917600	Weak transcription	Fetal Lung	lung
10	chrX:153903000-153909000	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chrX:153903000-153909600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chrX:153903000-153910400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chrX:153903000-153914600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chrX:153903200-153923600	Weak transcription	Fetal Muscle Leg	muscle
15	chrX:153903200-153924800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chrX:153903400-153925200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chrX:153903600-153909400	Strong transcription	Left Ventricle	heart
18	chrX:153903800-153923400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chrX:153904000-153921400	Weak transcription	Primary hematopoietic stem cells	blood
20	chrX:153905000-153909400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chrX:153906200-153940200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chrX:153906400-153915800	Weak transcription	Right Ventricle	heart
23	chrX:153906400-153924800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chrX:153906600-153909400	Weak transcription	Brain Substantia Nigra	brain
25	chrX:153906800-153911600	Weak transcription	Stomach Smooth Muscle	stomach
26	chrX:153906800-153925000	Weak transcription	Spleen	Spleen
27	chrX:153907000-153923600	Weak transcription	Fetal Thymus	thymus
28	chrX:153907000-153939600	Weak transcription	Aorta	Aorta
29	chrX:153907600-153940000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chrX:153907800-153923800	Weak transcription	Adipose Nuclei	Adipose
31	chrX:153908200-153923400	Weak transcription	Primary B cells from peripheral blood	blood
32	chrX:153908400-153923600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chrX:153908600-153911800	Weak transcription	Dnd41	blood
34	chrX:153908600-153921600	Weak transcription	Thymus	Thymus
35	chrX:153908600-153923400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chrX:153908600-153923600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chrX:153908800-153911400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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