Variant report

Variant	rs5987015
Chromosome Location	chrX:153947981-153947982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:153945898..153948533-chrX:153970918..153973304,2	K562	blood:
2	chrX:153946084..153948433-chrX:153964027..153967909,3	K562	blood:
3	chrX:153946077..153948642-chrX:153990257..153991888,2	K562	blood:
4	chrX:153945510..153948324-chrX:153977312..153980587,3	K562	blood:
5	chrX:153945498..153948433-chrX:153965019..153967909,3	K562	blood:
6	chrX:153945382..153951855-chrX:153952436..153958335,9	K562	blood:
7	chrX:153945866..153948564-chrX:153975636..153977588,2	K562	blood:
8	chrX:153946602..153948265-chrX:153948807..153951805,3	K562	blood:
9	chrX:153946824..153948954-chrX:153978992..153982006,3	K562	blood:
10	chrX:153943407..153945840-chrX:153947383..153949982,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000160219	Chromatin interaction
ENSG00000130826	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10127172	0.89[CHB][hapmap]
rs1800533	0.85[GIH][hapmap]
rs1848763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2063320	0.85[GIH][hapmap];0.88[JPT][hapmap]
rs2664169	0.94[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2664170	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs2728526	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2728530	0.89[CHB][hapmap]
rs2728538	0.81[MEX][hapmap]
rs2728725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap]
rs4326559	0.89[CHB][hapmap]
rs4431759	0.89[CHB][hapmap]
rs4526543	0.89[CHB][hapmap]
rs5945222	0.89[CHB][hapmap]
rs5945223	0.89[CHB][hapmap]
rs5945224	0.89[CHB][hapmap]
rs5945232	0.88[CEU][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap]
rs5945233	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs5987005	0.88[CHB][hapmap]
rs5987011	0.89[CHB][hapmap]
rs5987016	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6643615	0.88[CHB][hapmap]
rs6643620	0.88[MEX][hapmap]
rs884840	0.89[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5987015	F8A1	cis	lymphoblastoid	seeQTL

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153924200-153955400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chrX:153925000-153957200	Weak transcription	Brain Hippocampus Middle	brain
3	chrX:153936400-153955400	Weak transcription	Psoas Muscle	Psoas
4	chrX:153941400-153961000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chrX:153941600-153957000	Weak transcription	Aorta	Aorta
6	chrX:153944200-153948200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chrX:153944800-153948600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chrX:153944800-153950200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chrX:153945400-153948200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chrX:153945400-153948400	Enhancers	Fetal Thymus	thymus
11	chrX:153945400-153948600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chrX:153945400-153948600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chrX:153945400-153948600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chrX:153945400-153949200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chrX:153945600-153948200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chrX:153945600-153948400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chrX:153945600-153948400	Enhancers	Primary B cells from peripheral blood	blood
18	chrX:153945600-153948600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chrX:153945800-153948000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chrX:153945800-153948000	Enhancers	Thymus	Thymus
21	chrX:153945800-153948000	Enhancers	Spleen	Spleen
22	chrX:153945800-153948200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chrX:153945800-153948200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chrX:153945800-153948200	Enhancers	Placenta	Placenta
25	chrX:153945800-153948200	Enhancers	NH-A	brain
26	chrX:153945800-153948200	Enhancers	Osteobl	bone
27	chrX:153945800-153948600	Enhancers	HUVEC	blood vessel
28	chrX:153946000-153948200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chrX:153946000-153948200	Enhancers	GM12878-XiMat	blood
30	chrX:153946000-153948400	Enhancers	Muscle Satellite Cultured Cells	--
31	chrX:153946000-153948600	Flanking Active TSS	Dnd41	blood
32	chrX:153946000-153952800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chrX:153946200-153948200	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chrX:153946200-153948400	Enhancers	Primary T cells from cord blood	blood
35	chrX:153946400-153948200	Enhancers	Primary T cells fromperipheralblood	blood
36	chrX:153946400-153948200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chrX:153946400-153950000	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chrX:153946800-153948600	Enhancers	Duodenum Mucosa	Duodenum
39	chrX:153946800-153956400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chrX:153947000-153948000	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chrX:153947200-153948000	Flanking Active TSS	Primary B cells from cord blood	blood
42	chrX:153947200-153948200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chrX:153947400-153948000	Enhancers	Fetal Heart	heart
44	chrX:153947400-153948200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chrX:153947400-153948200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chrX:153947400-153948200	Enhancers	Hela-S3	cervix
47	chrX:153947600-153948000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chrX:153947600-153948000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chrX:153947600-153949400	Enhancers	Primary monocytes fromperipheralblood	blood
50	chrX:153947800-153948000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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