Variant report

Variant	rs5945218
Chromosome Location	chrX:153877430-153877431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12392447	0.81[CEU][hapmap]
rs17052003	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs1800533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs2063320	0.94[GIH][hapmap]
rs2071429	1.00[CHB][hapmap]
rs2472393	1.00[CHB][hapmap]
rs2472394	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs2664167	1.00[JPT][hapmap]
rs4898389	1.00[CHB][hapmap]
rs4898397	0.81[CEU][hapmap]
rs5945100	0.90[CEU][hapmap];0.83[CHD][hapmap];0.85[TSI][hapmap]
rs5945195	0.81[CEU][hapmap]
rs6643707	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7879049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3648994	chrX:153829693-153919915	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv518228	chrX:153829693-153919915	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3347979	chrX:153836429-153878781	Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153877200-153877800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chrX:153877200-153878600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chrX:153877400-153878600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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