Variant report

Variant	rs2071429
Chromosome Location	chrX:153760508-153760509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:153624951..153633171-chrX:153753466..153766700,56	K562	blood:
2	chrX:153714107..153716524-chrX:153758320..153760975,2	K562	blood:
3	chrX:153745420..153747096-chrX:153760396..153761962,2	MCF-7	breast:
4	chrX:153590140..153593594-chrX:153758031..153760804,3	K562	blood:
5	chrX:153624619..153634737-chrX:153752670..153765167,48	K562	blood:
6	chrX:153758025..153760730-chrX:153770356..153773007,2	K562	blood:
7	chrX:153716591..153719233-chrX:153758600..153761037,2	K562	blood:
8	chrX:153625412..153631801-chrX:153757258..153764804,13	MCF-7	breast:
9	chrX:153595771..153598554-chrX:153758917..153761035,2	K562	blood:
10	X:153657611-153671976..X:153755323-153771683	Hela-S3	cervix:
11	chrX:153635949..153638867-chrX:153759351..153764170,5	K562	blood:
12	chrX:153596758..153603302-chrX:153757517..153765995,15	MCF-7	breast:
13	chrX:153604275..153607136-chrX:153758955..153760642,2	MCF-7	breast:
14	chrX:153760070..153764716-chrX:153773233..153775153,4	K562	blood:
15	chrX:153760244..153763093-chrX:153768256..153770323,2	K562	blood:
16	chrX:153599552..153602138-chrX:153758984..153760553,2	MCF-7	breast:
17	X:153719993-153730954..X:153755323-153771683	K562	blood:
18	X:153614328-153625659..X:153755323-153771683	K562	blood:

No data

Variant related genes	Relation type
ENSG00000102178	Chromatin interaction
ENSG00000147403	Chromatin interaction
ENSG00000203879	Chromatin interaction
ENSG00000261773	Chromatin interaction
ENSG00000073009	Chromatin interaction
ENSG00000264783	Chromatin interaction
ENSG00000196924	Chromatin interaction
ENSG00000126903	Chromatin interaction
ENSG00000013563	Chromatin interaction
ENSG00000264484	Chromatin interaction
ENSG00000160211	Chromatin interaction
ENSG00000071553	Chromatin interaction
ENSG00000207165	Chromatin interaction
ENSG00000264631	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1050047	0.82[CEU][hapmap]
rs12392447	0.91[CEU][hapmap]
rs17052003	1.00[CHB][hapmap]
rs2315325	0.82[CEU][hapmap]
rs2472393	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs2472394	1.00[CHB][hapmap]
rs4898389	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs5945100	0.82[CEU][hapmap]
rs5945108	1.00[YRI][hapmap]
rs5945195	0.91[CEU][hapmap]
rs5945218	1.00[CHB][hapmap]
rs5945429	0.82[CEU][hapmap]
rs5945431	0.82[CEU][hapmap]
rs5945433	0.82[CEU][hapmap]
rs5986981	0.82[CEU][hapmap]
rs5987266	0.82[CEU][hapmap]
rs5987267	0.82[CEU][hapmap]
rs7051615	0.82[CEU][hapmap]
rs7053878	1.00[YRI][hapmap]
rs7057286	0.82[CEU][hapmap]
rs7611	0.82[CHB][hapmap]
rs7879049	1.00[CHB][hapmap]
rs7886727	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33199	chrX:152864376-153820241	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	276 gene(s)	inside rSNPs	diseases
2	nsv528291	chrX:152864376-153827637	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases
3	nsv915605	chrX:153333946-153783638	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
4	nsv519042	chrX:153348431-153829693	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
5	nsv532962	chrX:153564946-153870337	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
6	nsv532963	chrX:153576890-153822717	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	195 gene(s)	inside rSNPs	diseases
7	nsv530281	chrX:153622940-153783184	Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
8	nsv532964	chrX:153622940-153854307	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
9	nsv995104	chrX:153731421-153832724	Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153755800-153760600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chrX:153755800-153760600	Weak transcription	Primary T cells from cord blood	blood
3	chrX:153755800-153760600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chrX:153755800-153760600	Weak transcription	Liver	Liver
5	chrX:153755800-153760600	Weak transcription	Pancreas	Pancrea
6	chrX:153755800-153760600	Weak transcription	Dnd41	blood
7	chrX:153755800-153761600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chrX:153755800-153769200	Weak transcription	Primary hematopoietic stem cells	blood
9	chrX:153755800-153769400	Weak transcription	Right Atrium	heart
10	chrX:153755800-153770000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chrX:153756000-153760600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chrX:153756000-153760600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chrX:153756000-153760600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chrX:153756000-153760600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chrX:153756000-153760600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chrX:153756000-153760600	Weak transcription	Brain Anterior Caudate	brain
17	chrX:153756000-153760600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chrX:153756000-153760600	Weak transcription	Colonic Mucosa	Colon
19	chrX:153756000-153760600	Weak transcription	Duodenum Mucosa	Duodenum
20	chrX:153756000-153760800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chrX:153756000-153760800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chrX:153756000-153760800	Weak transcription	Brain Hippocampus Middle	brain
23	chrX:153756000-153760800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chrX:153756000-153760800	Weak transcription	Left Ventricle	heart
25	chrX:153756000-153761000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chrX:153756000-153761000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chrX:153756000-153761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chrX:153756000-153761200	Weak transcription	HMEC	breast
29	chrX:153756000-153761400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chrX:153756000-153761400	Weak transcription	Hela-S3	cervix
31	chrX:153756000-153761400	Weak transcription	HSMM	muscle
32	chrX:153756000-153761600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chrX:153756000-153762800	Weak transcription	Primary B cells from cord blood	blood
34	chrX:153756000-153762800	Weak transcription	Fetal Kidney	kidney
35	chrX:153756000-153763400	Weak transcription	NHDF-Ad	bronchial
36	chrX:153756000-153768800	Weak transcription	NH-A	brain
37	chrX:153756000-153769000	Weak transcription	HUVEC	blood vessel
38	chrX:153756000-153770400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chrX:153756000-153770600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chrX:153756000-153770600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chrX:153756000-153774200	Weak transcription	Psoas Muscle	Psoas
42	chrX:153756000-153774800	Weak transcription	Aorta	Aorta
43	chrX:153756200-153760600	Weak transcription	Adipose Nuclei	Adipose
44	chrX:153756200-153760600	Weak transcription	Fetal Muscle Leg	muscle
45	chrX:153756200-153760800	Weak transcription	Brain Angular Gyrus	brain
46	chrX:153756200-153761000	Weak transcription	Primary B cells from peripheral blood	blood
47	chrX:153756200-153761000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chrX:153756200-153762600	Weak transcription	GM12878-XiMat	blood
49	chrX:153756200-153768800	Weak transcription	Stomach Mucosa	stomach
50	chrX:153756200-153770000	Weak transcription	Fetal Lung	lung

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