Variant report

Variant	rs6643707
Chromosome Location	chrX:154042428-154042429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	X:153625659-153635385..X:154040906-154043059	GM12878	blood:
2	chrX:154041365..154043169-chrX:154056932..154059655,2	K562	blood:
3	X:153240638-153254508..X:154040906-154043059	K562	blood:
4	X:153967468-153979902..X:154040906-154043059	K562	blood:
5	chrX:154040429..154043169-chrX:154058155..154060160,2	K562	blood:
6	X:154015910-154019964..X:154040906-154043059	H1-hESC	embryonic stem cell:	embryo
7	X:153198557-153214268..X:154040906-154043059	K562	blood:
8	X:153586280-153597086..X:154040906-154043059	K562	blood:
9	X:153574513-153584637..X:154040906-154043059	K562	blood:
10	X:153755323-153771683..X:154040906-154043059	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000089820	Chromatin interaction
ENSG00000102032	Chromatin interaction
ENSG00000207165	Chromatin interaction
ENSG00000196924	Chromatin interaction
ENSG00000013563	Chromatin interaction
ENSG00000265176	Chromatin interaction
ENSG00000177854	Chromatin interaction
ENSG00000102030	Chromatin interaction
ENSG00000073009	Chromatin interaction
ENSG00000160211	Chromatin interaction
ENSG00000130830	Chromatin interaction
ENSG00000147403	Chromatin interaction
ENSG00000160219	Chromatin interaction

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154039000-154043800	Weak transcription	Fetal Intestine Small	intestine
2	chrX:154039000-154047400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chrX:154040600-154043600	Enhancers	K562	blood
4	chrX:154041800-154044000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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