Variant report

Variant	rs5987079
Chromosome Location	chrX:154247392-154247393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	X:154246841-154250209..X:154274113-154276803	K562	blood:
2	X:153625659-153635385..X:154246841-154250209	K562	blood:

Variant related genes	Relation type
ENSG00000013563	Chromatin interaction
ENSG00000165775	Chromatin interaction
ENSG00000207165	Chromatin interaction
ENSG00000147403	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1050705	1.00[CEU][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.88[MEX][hapmap]
rs1075950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1470586	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs1472977	1.00[JPT][hapmap]
rs17051889	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs1936645	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2084409	0.94[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2096362	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs2313058	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap]
rs4074307	1.00[CEU][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs4898352	1.00[CEU][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs4898358	0.91[GIH][hapmap]
rs4898397	1.00[JPT][hapmap]
rs4898406	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs4898407	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4898408	0.81[CHB][hapmap]
rs5945133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945134	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945250	0.89[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs5945279	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs5945281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs5945287	0.81[CEU][hapmap];0.91[GIH][hapmap]
rs5945296	0.89[MEX][hapmap]
rs5945300	0.91[GIH][hapmap]
rs5945301	0.94[GIH][hapmap]
rs5986908	0.94[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap]
rs5987077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap]
rs5987092	0.94[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap]
rs5987094	0.94[CEU][hapmap]
rs6643622	0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs6649617	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs7472099	0.89[MEX][hapmap]
rs7881389	0.83[LWK][hapmap]
rs965691	0.89[MEX][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154236800-154254200	Weak transcription	Pancreas	Pancrea
2	chrX:154243400-154251400	Active TSS	Right Atrium	heart
3	chrX:154245600-154247600	Weak transcription	Left Ventricle	heart
4	chrX:154245600-154248600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chrX:154246600-154251000	Active TSS	Right Ventricle	heart

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