Variant report

Variant	rs965691
Chromosome Location	chrX:154308207-154308208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:154307813..154309379-chrX:154309921..154312419,2	MCF-7	breast:
2	chrX:154094484..154096805-chrX:154306859..154309258,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11887	1.00[ASW][hapmap]
rs2051161	0.81[CHD][hapmap];0.97[GIH][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap]
rs2084408	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs2084409	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs2096362	0.89[MEX][hapmap]
rs2313058	0.88[MEX][hapmap]
rs4074307	0.88[MEX][hapmap]
rs480210	0.87[ASW][hapmap]
rs4898352	0.89[MEX][hapmap]
rs4898358	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs4898407	0.81[CHB][hapmap]
rs4898408	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4898413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs499669	1.00[ASW][hapmap]
rs573189	0.87[ASW][hapmap]
rs5945282	0.87[ASW][hapmap];0.97[GIH][hapmap];1.00[MKK][hapmap]
rs5945287	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945289	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs5945296	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap]
rs5945300	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs5945301	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs5986908	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs5987077	0.94[MEX][hapmap]
rs5987079	0.89[MEX][hapmap]
rs5987087	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs5987090	0.82[CHB][hapmap]
rs5987092	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs5987094	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6642218	0.92[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs6643622	0.88[MEX][hapmap]
rs6643714	0.87[ASW][hapmap];0.85[GIH][hapmap];0.84[MKK][hapmap]
rs6649617	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs7051718	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7472099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs7879736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs895744	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs895745	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154300600-154309200	Weak transcription	Stomach Mucosa	stomach
2	chrX:154300600-154318600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chrX:154300600-154325600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chrX:154300600-154329400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chrX:154300600-154331800	Weak transcription	Rectal Smooth Muscle	rectum
6	chrX:154300600-154350000	Weak transcription	Right Ventricle	heart
7	chrX:154300600-154351200	Weak transcription	Brain Cingulate Gyrus	brain
8	chrX:154300600-154355000	Weak transcription	Aorta	Aorta
9	chrX:154300800-154308400	Weak transcription	Small Intestine	intestine
10	chrX:154300800-154329800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chrX:154300800-154348000	Weak transcription	HSMM	muscle
12	chrX:154300800-154348200	Weak transcription	Osteobl	bone
13	chrX:154300800-154350800	Weak transcription	NHDF-Ad	bronchial
14	chrX:154300800-154351600	Weak transcription	Colonic Mucosa	Colon
15	chrX:154300800-154353400	Weak transcription	HSMMtube	muscle
16	chrX:154301000-154319000	Weak transcription	Fetal Heart	heart
17	chrX:154301000-154319400	Weak transcription	Pancreas	Pancrea
18	chrX:154301200-154308400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
19	chrX:154301200-154311200	Weak transcription	Primary hematopoietic stem cells	blood
20	chrX:154301200-154333600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chrX:154301200-154340800	Weak transcription	Brain Germinal Matrix	brain
22	chrX:154301200-154347800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chrX:154301200-154354200	Weak transcription	Esophagus	oesophagus
24	chrX:154301400-154313800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chrX:154301400-154325200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chrX:154301600-154308400	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chrX:154301600-154308800	Weak transcription	Fetal Brain Female	brain
28	chrX:154302000-154312600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chrX:154302400-154338600	Weak transcription	HepG2	liver
30	chrX:154302800-154313800	Weak transcription	GM12878-XiMat	blood
31	chrX:154303400-154308400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chrX:154303400-154309000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chrX:154303600-154309400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chrX:154303800-154309200	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chrX:154303800-154309400	Strong transcription	Dnd41	blood
36	chrX:154303800-154317600	Weak transcription	NHEK	skin
37	chrX:154304000-154308600	Weak transcription	HMEC	breast
38	chrX:154304000-154309800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chrX:154304200-154326000	Weak transcription	NHLF	lung
40	chrX:154304400-154312400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chrX:154304600-154313800	Weak transcription	Brain Angular Gyrus	brain
42	chrX:154304800-154308800	Strong transcription	Primary B cells from peripheral blood	blood
43	chrX:154305400-154309000	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chrX:154305400-154309000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chrX:154306000-154344800	Weak transcription	Primary T cells from cord blood	blood
46	chrX:154306200-154340600	Weak transcription	Psoas Muscle	Psoas
47	chrX:154306400-154308800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chrX:154306400-154312800	Weak transcription	Fetal Intestine Small	intestine
49	chrX:154306400-154312800	Weak transcription	Spleen	Spleen
50	chrX:154306400-154313600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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