Variant report

Variant	rs5945282
Chromosome Location	chrX:154282391-154282392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:154214368..154216581-chrX:154282255..154284814,2	MCF-7	breast:
2	chrX:154281656..154283428-chrX:154283834..154286691,2	K562	blood:
3	chrX:154281065..154287659-chrX:154295026..154301209,15	MCF-7	breast:
4	chrX:154281654..154283189-chrX:154283642..154285973,2	MCF-7	breast:
5	chrX:154207649..154210799-chrX:154281985..154285680,3	K562	blood:

Variant related genes	Relation type
ENSG00000182712	Chromatin interaction
ENSG00000214827	Chromatin interaction
ENSG00000185515	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11887	0.87[ASW][hapmap]
rs2051161	0.87[ASW][hapmap];0.94[CEU][hapmap];0.94[GIH][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap]
rs2084408	0.91[GIH][hapmap]
rs28835013	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap]
rs480210	1.00[ASW][hapmap]
rs499669	0.87[ASW][hapmap]
rs573189	1.00[ASW][hapmap]
rs5945140	0.94[CEU][hapmap]
rs5945296	0.91[GIH][hapmap];0.92[MKK][hapmap]
rs5987087	0.88[GIH][hapmap]
rs6642218	0.88[GIH][hapmap]
rs6643714	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap]
rs7472099	0.94[GIH][hapmap]
rs895744	0.91[GIH][hapmap]
rs895745	0.91[GIH][hapmap]
rs965691	0.87[ASW][hapmap];0.97[GIH][hapmap];1.00[MKK][hapmap]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154256400-154293800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chrX:154256400-154297800	Weak transcription	Ovary	ovary
3	chrX:154256600-154284800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chrX:154256800-154285400	Weak transcription	Rectal Smooth Muscle	rectum
5	chrX:154257200-154285200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chrX:154257200-154298200	Weak transcription	HSMMtube	muscle
7	chrX:154257400-154285000	Weak transcription	HepG2	liver
8	chrX:154257400-154285200	Weak transcription	Stomach Smooth Muscle	stomach
9	chrX:154257600-154284800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chrX:154257600-154285000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chrX:154257600-154285000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chrX:154257600-154285200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chrX:154257600-154297800	Weak transcription	Right Ventricle	heart
14	chrX:154262800-154298400	Weak transcription	Brain Germinal Matrix	brain
15	chrX:154263800-154284800	Weak transcription	Placenta	Placenta
16	chrX:154263800-154289800	Weak transcription	HSMM	muscle
17	chrX:154264000-154285400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chrX:154264200-154285000	Weak transcription	Fetal Intestine Small	intestine
19	chrX:154264200-154297800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chrX:154264400-154285000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chrX:154264600-154284800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chrX:154264600-154285200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chrX:154264600-154285600	Weak transcription	Brain Substantia Nigra	brain
24	chrX:154264600-154297800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chrX:154264800-154283000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chrX:154267200-154297800	Weak transcription	Primary B cells from cord blood	blood
27	chrX:154267600-154285200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chrX:154268000-154297800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chrX:154269400-154285000	Weak transcription	GM12878-XiMat	blood
30	chrX:154270200-154297800	Weak transcription	Fetal Lung	lung
31	chrX:154271600-154285200	Weak transcription	Gastric	stomach
32	chrX:154271800-154285400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chrX:154273800-154285200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chrX:154274000-154298400	Weak transcription	Esophagus	oesophagus
35	chrX:154274200-154285600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chrX:154274200-154285600	Weak transcription	Lung	lung
37	chrX:154274600-154285800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chrX:154275000-154288800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chrX:154275200-154285200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chrX:154275600-154285200	Weak transcription	Colon Smooth Muscle	Colon
41	chrX:154276200-154282800	Weak transcription	Fetal Thymus	thymus
42	chrX:154276200-154284800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chrX:154276200-154284800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chrX:154276200-154285400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chrX:154276200-154285400	Weak transcription	Right Atrium	heart
46	chrX:154276200-154298400	Weak transcription	Aorta	Aorta
47	chrX:154276200-154298400	Weak transcription	Psoas Muscle	Psoas
48	chrX:154276400-154282400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chrX:154276400-154285400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chrX:154276600-154285400	Weak transcription	Brain Angular Gyrus	brain

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