Variant report

Variant	rs2051161
Chromosome Location	chrX:154285851-154285852
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:154281654..154283189-chrX:154283642..154285973,2	MCF-7	breast:
2	chrX:154285059..154287579-chrX:154443648..154446213,2	K562	blood:
3	chrX:154215175..154216054-chrX:154285383..154286034,3	MCF-7	breast:
4	chrX:154283971..154287521-chrX:154289201..154292331,3	K562	blood:
5	chrX:154285752..154287392-chrX:154296129..154297641,2	K562	blood:
6	chrX:154281065..154287659-chrX:154295026..154301209,15	MCF-7	breast:
7	chrX:154214141..154217126-chrX:154284358..154286159,2	K562	blood:
8	chrX:154253536..154258495-chrX:154282509..154289154,14	MCF-7	breast:
9	chrX:154208751..154210920-chrX:154284599..154287482,2	MCF-7	breast:
10	chrX:154215427..154216136-chrX:154285455..154286250,4	MCF-7	breast:
11	chrX:154283497..154287368-chrX:154297304..154300878,4	MCF-7	breast:
12	chrX:154284657..154287263-chrX:154297760..154299435,2	K562	blood:
13	chrX:154208862..154210116-chrX:154285044..154286245,9	MCF-7	breast:
14	chrX:154208831..154209797-chrX:154285357..154286294,4	K562	blood:
15	chrX:154214198..154217030-chrX:154283891..154287268,5	MCF-7	breast:
16	chrX:154276218..154279211-chrX:154282972..154286544,4	MCF-7	breast:
17	chrX:154281656..154283428-chrX:154283834..154286691,2	K562	blood:
18	chrX:154215922..154217724-chrX:154285576..154287602,2	MCF-7	breast:
19	chrX:154254061..154257275-chrX:154284898..154288161,5	MCF-7	breast:
20	chrX:154285580..154287588-chrX:154290309..154293819,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185010	Chromatin interaction
ENSG00000165775	Chromatin interaction
ENSG00000182712	Chromatin interaction
ENSG00000155959	Chromatin interaction
ENSG00000185515	Chromatin interaction
ENSG00000214827	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2084408	0.81[CHD][hapmap];0.91[GIH][hapmap]
rs28835013	0.87[ASW][hapmap];0.94[CEU][hapmap];0.88[GIH][hapmap]
rs480210	0.87[ASW][hapmap]
rs573189	0.87[ASW][hapmap]
rs5945140	0.89[CEU][hapmap];0.93[CHB][hapmap]
rs5945282	0.87[ASW][hapmap];0.94[CEU][hapmap];0.94[GIH][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap]
rs5945296	0.97[GIH][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap]
rs5945301	0.84[CHB][hapmap]
rs5987087	0.81[CHD][hapmap];0.88[GIH][hapmap]
rs6642218	0.81[CHD][hapmap];0.94[GIH][hapmap]
rs6643714	0.87[ASW][hapmap];0.94[CEU][hapmap];0.88[GIH][hapmap];0.85[TSI][hapmap]
rs7472099	0.81[CHD][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap]
rs895744	0.81[CHD][hapmap];0.91[GIH][hapmap]
rs895745	0.81[CHD][hapmap];0.91[GIH][hapmap]
rs965691	0.81[CHD][hapmap];0.97[GIH][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2051161	PLXNA3	cis	multi-tissue	Pritchard

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154256400-154293800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chrX:154256400-154297800	Weak transcription	Ovary	ovary
3	chrX:154257200-154298200	Weak transcription	HSMMtube	muscle
4	chrX:154257600-154297800	Weak transcription	Right Ventricle	heart
5	chrX:154262800-154298400	Weak transcription	Brain Germinal Matrix	brain
6	chrX:154263800-154289800	Weak transcription	HSMM	muscle
7	chrX:154264200-154297800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chrX:154264600-154297800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chrX:154267200-154297800	Weak transcription	Primary B cells from cord blood	blood
10	chrX:154268000-154297800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chrX:154270200-154297800	Weak transcription	Fetal Lung	lung
12	chrX:154274000-154298400	Weak transcription	Esophagus	oesophagus
13	chrX:154275000-154288800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chrX:154276200-154298400	Weak transcription	Aorta	Aorta
15	chrX:154276200-154298400	Weak transcription	Psoas Muscle	Psoas
16	chrX:154276600-154298000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chrX:154277800-154286000	Weak transcription	Fetal Stomach	stomach
18	chrX:154277800-154298200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chrX:154280400-154298200	Weak transcription	Thymus	Thymus
20	chrX:154280800-154287400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chrX:154280800-154288000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chrX:154281600-154287600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chrX:154282200-154288800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chrX:154282400-154298000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chrX:154283200-154296600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chrX:154283200-154298000	Weak transcription	Spleen	Spleen
27	chrX:154284800-154286200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chrX:154284800-154286200	Enhancers	Liver	Liver
29	chrX:154285000-154286000	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chrX:154285000-154286000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chrX:154285000-154286000	Enhancers	Fetal Muscle Leg	muscle
32	chrX:154285000-154286000	Enhancers	Fetal Thymus	thymus
33	chrX:154285000-154286200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chrX:154285000-154286200	Enhancers	GM12878-XiMat	blood
35	chrX:154285000-154286400	Bivalent Enhancer	Placenta	Placenta
36	chrX:154285200-154286000	Enhancers	Left Ventricle	heart
37	chrX:154285200-154286000	Enhancers	HMEC	breast
38	chrX:154285200-154286000	Flanking Active TSS	K562	blood
39	chrX:154285200-154286200	Enhancers	Primary B cells from peripheral blood	blood
40	chrX:154285200-154286400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chrX:154285400-154286000	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chrX:154285400-154286000	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chrX:154285400-154286000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chrX:154285400-154286000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
45	chrX:154285400-154286000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chrX:154285400-154286000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
47	chrX:154285400-154286000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chrX:154285400-154286000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chrX:154285400-154286000	Flanking Active TSS	Brain Angular Gyrus	brain
50	chrX:154285400-154286000	Flanking Active TSS	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links