Variant report

Variant	rs4898413
Chromosome Location	chrX:154349029-154349030
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2084408	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2084409	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4898358	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4898407	0.81[CHB][hapmap]
rs4898408	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs5945140	0.81[CEU][hapmap]
rs5945287	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945289	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945296	1.00[CEU][hapmap]
rs5945300	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945301	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5986908	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5987087	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5987090	0.83[CHB][hapmap]
rs5987092	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5987094	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6642218	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6649617	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7051718	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7472099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7879736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs895744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs895745	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs965691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154300600-154350000	Weak transcription	Right Ventricle	heart
2	chrX:154300600-154351200	Weak transcription	Brain Cingulate Gyrus	brain
3	chrX:154300600-154355000	Weak transcription	Aorta	Aorta
4	chrX:154300800-154350800	Weak transcription	NHDF-Ad	bronchial
5	chrX:154300800-154351600	Weak transcription	Colonic Mucosa	Colon
6	chrX:154300800-154353400	Weak transcription	HSMMtube	muscle
7	chrX:154301200-154354200	Weak transcription	Esophagus	oesophagus
8	chrX:154306400-154349800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chrX:154306800-154350400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chrX:154307000-154349600	Weak transcription	Ovary	ovary
11	chrX:154307000-154349600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chrX:154307400-154351000	Weak transcription	Hela-S3	cervix
13	chrX:154307600-154350400	Weak transcription	Colon Smooth Muscle	Colon
14	chrX:154307800-154350000	Weak transcription	NH-A	brain
15	chrX:154307800-154350400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chrX:154307800-154352800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chrX:154307800-154357400	Weak transcription	Brain Hippocampus Middle	brain
18	chrX:154308000-154353600	Weak transcription	Fetal Intestine Large	intestine
19	chrX:154308200-154353800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chrX:154314600-154355800	Weak transcription	Brain Angular Gyrus	brain
21	chrX:154314800-154350000	Weak transcription	Spleen	Spleen
22	chrX:154314800-154353400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chrX:154314800-154353600	Weak transcription	Thymus	Thymus
24	chrX:154315400-154349800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chrX:154318200-154349400	Weak transcription	Left Ventricle	heart
26	chrX:154319400-154355400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chrX:154319600-154355200	Weak transcription	Primary B cells from cord blood	blood
28	chrX:154320000-154354400	Weak transcription	Placenta	Placenta
29	chrX:154321200-154349600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chrX:154323200-154353800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chrX:154323400-154353800	Weak transcription	K562	blood
32	chrX:154329000-154350800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chrX:154341800-154353600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chrX:154342000-154351400	Weak transcription	Fetal Muscle Leg	muscle
35	chrX:154343000-154356600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chrX:154343400-154350800	Weak transcription	Brain Anterior Caudate	brain
37	chrX:154343600-154350000	Weak transcription	Fetal Muscle Trunk	muscle
38	chrX:154343800-154349800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chrX:154343800-154352400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chrX:154343800-154352400	Weak transcription	HMEC	breast
41	chrX:154344000-154356600	Weak transcription	Pancreas	Pancrea
42	chrX:154344400-154352200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chrX:154344400-154352200	Weak transcription	Fetal Stomach	stomach
44	chrX:154345000-154349600	Strong transcription	Dnd41	blood
45	chrX:154345000-154349800	Strong transcription	Duodenum Mucosa	Duodenum
46	chrX:154345000-154350400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chrX:154345000-154350400	Strong transcription	Adipose Nuclei	Adipose
48	chrX:154345200-154349400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chrX:154345200-154349800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chrX:154345200-154350400	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links