Variant report

Variant	rs5945286
Chromosome Location	chrX:154302678-154302679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:154253583..154258832-chrX:154297466..154303470,15	MCF-7	breast:
2	chrX:154253429..154256726-chrX:154299534..154303632,4	MCF-7	breast:
3	X:153719993-153730954..X:154298909-154305587	K562	blood:
4	X:154140465-154148278..X:154298909-154305587	Hela-S3	cervix:
5	chrX:154301914..154303423-chrX:154318401..154321232,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165775	Chromatin interaction
ENSG00000237859	Chromatin interaction
ENSG00000185010	Chromatin interaction
ENSG00000264631	Chromatin interaction
ENSG00000264783	Chromatin interaction
ENSG00000264484	Chromatin interaction

rs_ID	r²[population]
rs1448032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17052030	0.83[YRI][hapmap]
rs28370235	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945128	0.82[JPT][hapmap]
rs5945137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5945269	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7881389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154300400-154304000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chrX:154300400-154305600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chrX:154300400-154305800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chrX:154300400-154305800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chrX:154300400-154308200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chrX:154300600-154302800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chrX:154300600-154303600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chrX:154300600-154303800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chrX:154300600-154303800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chrX:154300600-154303800	Weak transcription	Colon Smooth Muscle	Colon
11	chrX:154300600-154303800	Weak transcription	Left Ventricle	heart
12	chrX:154300600-154304000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chrX:154300600-154304800	Weak transcription	Psoas Muscle	Psoas
14	chrX:154300600-154305000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chrX:154300600-154305000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chrX:154300600-154305800	Weak transcription	Brain Substantia Nigra	brain
17	chrX:154300600-154305800	Weak transcription	Ovary	ovary
18	chrX:154300600-154307400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chrX:154300600-154307400	Weak transcription	Lung	lung
20	chrX:154300600-154309200	Weak transcription	Stomach Mucosa	stomach
21	chrX:154300600-154318600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chrX:154300600-154325600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chrX:154300600-154329400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chrX:154300600-154331800	Weak transcription	Rectal Smooth Muscle	rectum
25	chrX:154300600-154350000	Weak transcription	Right Ventricle	heart
26	chrX:154300600-154351200	Weak transcription	Brain Cingulate Gyrus	brain
27	chrX:154300600-154355000	Weak transcription	Aorta	Aorta
28	chrX:154300800-154303600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chrX:154300800-154303600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chrX:154300800-154303600	Weak transcription	Brain Hippocampus Middle	brain
31	chrX:154300800-154303600	Weak transcription	NH-A	brain
32	chrX:154300800-154303800	Weak transcription	Adipose Nuclei	Adipose
33	chrX:154300800-154303800	Weak transcription	HMEC	breast
34	chrX:154300800-154305400	Weak transcription	Brain Anterior Caudate	brain
35	chrX:154300800-154305400	Weak transcription	Fetal Intestine Small	intestine
36	chrX:154300800-154305600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chrX:154300800-154305600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chrX:154300800-154305800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chrX:154300800-154308400	Weak transcription	Small Intestine	intestine
40	chrX:154300800-154329800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chrX:154300800-154348000	Weak transcription	HSMM	muscle
42	chrX:154300800-154348200	Weak transcription	Osteobl	bone
43	chrX:154300800-154350800	Weak transcription	NHDF-Ad	bronchial
44	chrX:154300800-154351600	Weak transcription	Colonic Mucosa	Colon
45	chrX:154300800-154353400	Weak transcription	HSMMtube	muscle
46	chrX:154301000-154303000	Genic enhancers	NHEK	skin
47	chrX:154301000-154303600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chrX:154301000-154303600	Weak transcription	Placenta	Placenta
49	chrX:154301000-154303600	Weak transcription	NHLF	lung
50	chrX:154301000-154304400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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