Variant report

Variant	rs17053107
Chromosome Location	chr3:53519922-53519923
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11917637	1.00[AMR][1000 genomes]
rs11922512	1.00[AMR][1000 genomes]
rs17030962	0.86[ASW][hapmap];0.85[LWK][hapmap];0.87[MKK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17053116	0.92[YRI][hapmap]
rs17053120	1.00[AMR][1000 genomes]
rs2109183	1.00[AMR][1000 genomes]
rs57244620	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957240	1.00[AMR][1000 genomes]
rs72957241	1.00[AMR][1000 genomes]
rs72957261	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7635797	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53513800-53527800	Weak transcription	Pancreas	Pancrea
2	chr3:53517400-53524200	Enhancers	Fetal Lung	lung
3	chr3:53519400-53520200	Weak transcription	A549	lung
4	chr3:53519600-53520000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr3:53519600-53520800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr3:53519600-53526800	Enhancers	Fetal Intestine Large	intestine
7	chr3:53519600-53527000	Enhancers	Fetal Intestine Small	intestine
8	chr3:53519800-53520400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:53519800-53520800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:53519800-53520800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:53519800-53524600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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