Variant report

Variant	rs72957241
Chromosome Location	chr3:53495737-53495738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11917637	1.00[AMR][1000 genomes]
rs11922512	1.00[AMR][1000 genomes]
rs17030962	1.00[AMR][1000 genomes]
rs17053107	1.00[AMR][1000 genomes]
rs17053120	1.00[AMR][1000 genomes]
rs2109183	1.00[AMR][1000 genomes]
rs57244620	1.00[AMR][1000 genomes]
rs72957240	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957261	1.00[AMR][1000 genomes]
rs7635797	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53492600-53496800	Weak transcription	Pancreas	Pancrea
2	chr3:53494800-53497000	Enhancers	Fetal Intestine Large	intestine
3	chr3:53495400-53496400	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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