Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10491653	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1073540	1.00[ASW][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs1180112	0.82[CHB][hapmap]
rs1180124	0.82[CHB][hapmap]
rs12683986	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs17051690	0.86[AFR][1000 genomes]
rs17051696	0.86[AFR][1000 genomes]
rs17052443	1.00[ASW][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs17052748	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs17053503	0.86[ASN][1000 genomes]
rs1927148	0.86[JPT][hapmap]
rs1927150	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes]
rs2094399	0.83[AFR][1000 genomes]
rs2148853	0.86[AFR][1000 genomes]
rs2871295	0.86[AFR][1000 genomes]
rs4596711	0.86[AFR][1000 genomes]
rs4610818	0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs56860643	0.86[AFR][1000 genomes]
rs57398306	0.86[AFR][1000 genomes]
rs58662316	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs61092050	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs61266539	0.81[ASN][1000 genomes]
rs716535	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs943540	0.86[JPT][hapmap]
rs954808	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72944000-73002600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:72967400-72989600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:72972800-73002400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:72973200-72989600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:72973800-72988800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:72978200-73001000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:72983200-72992600	Weak transcription	Psoas Muscle	Psoas

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