Variant report

Variant	rs17055019
Chromosome Location	chr13:37749545-37749546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1537946	0.93[ASN][1000 genomes]
rs2147181	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap]
rs2323397	0.93[ASN][1000 genomes]
rs4509889	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4943449	0.93[ASN][1000 genomes]
rs4943450	0.93[ASN][1000 genomes]
rs58001767	0.93[ASN][1000 genomes]
rs58870775	0.90[AMR][1000 genomes]
rs58931149	0.94[AMR][1000 genomes]
rs61563256	0.87[AMR][1000 genomes]
rs6563513	0.90[ASN][1000 genomes]
rs6563516	0.93[ASN][1000 genomes]
rs73450992	0.87[AMR][1000 genomes]
rs73450993	0.87[AMR][1000 genomes]
rs8001995	0.90[ASN][1000 genomes]
rs938215	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs945633	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532007	0.90[ASN][1000 genomes]
rs9576193	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37746800-37751600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:37747400-37752400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:37747600-37752400	Enhancers	Fetal Lung	lung
4	chr13:37748000-37749600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:37748200-37749600	Weak transcription	Osteobl	bone
6	chr13:37748200-37750400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:37749200-37749800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:37749400-37749600	Enhancers	HSMMtube	muscle
9	chr13:37749400-37749800	Enhancers	Adipose Nuclei	Adipose
10	chr13:37749400-37750000	Active TSS	Fetal Brain Male	brain
11	chr13:37749400-37750400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:37749400-37751000	Enhancers	Rectal Smooth Muscle	rectum
13	chr13:37749400-37751000	Enhancers	NHLF	lung
14	chr13:37749400-37751400	Enhancers	NHDF-Ad	bronchial
15	chr13:37749400-37751800	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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