Variant report

Variant	rs61563256
Chromosome Location	chr13:37771137-37771138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17055019	0.87[AMR][1000 genomes]
rs17055155	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1998567	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2147181	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4943464	0.81[ASN][1000 genomes]
rs56784896	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58870775	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58931149	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60791500	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73450992	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73450993	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7999410	0.81[ASN][1000 genomes]
rs945633	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37766400-37772000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:37768000-37771800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:37768000-37772000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:37768600-37775400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:37768600-37775400	Weak transcription	NHLF	lung
6	chr13:37769000-37772600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:37769200-37772400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr13:37769400-37771800	Weak transcription	Osteobl	bone
9	chr13:37769400-37772800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:37769400-37775600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:37769600-37775400	Weak transcription	NHDF-Ad	bronchial
12	chr13:37769800-37773000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:37770000-37772800	Weak transcription	NH-A	brain
14	chr13:37770800-37772800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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