Variant report

Variant	rs17055299
Chromosome Location	chr13:37882096-37882097
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17055260	1.00[AMR][1000 genomes]
rs17055273	1.00[AMR][1000 genomes]
rs17055292	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055294	1.00[AMR][1000 genomes]
rs17055296	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7319280	1.00[AMR][1000 genomes]
rs7327632	1.00[AMR][1000 genomes]
rs7330462	1.00[AMR][1000 genomes]
rs7334043	1.00[AMR][1000 genomes]
rs7337146	1.00[AMR][1000 genomes]
rs7986223	1.00[AMR][1000 genomes]
rs7987182	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37881600-37882200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:37881600-37884200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:37881600-37886000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr13:37881600-37887000	Weak transcription	NH-A	brain
5	chr13:37881600-37887000	Weak transcription	Osteobl	bone
6	chr13:37881800-37884400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:37881800-37886400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:37882000-37887000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:37882000-37887200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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